Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2088582	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2412499	1.00[ASN][1000 genomes]
rs2616431	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616433	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616434	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4292386	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864488	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864820	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864822	0.83[ASN][1000 genomes]
rs59481386	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61202300	0.96[ASN][1000 genomes]
rs6813393	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816871	0.98[ASN][1000 genomes]
rs6828755	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6831739	0.95[ASN][1000 genomes]
rs6842780	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7378471	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7655896	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676596	0.96[ASN][1000 genomes]
rs7694601	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904414	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3379351	chr4:54646995-54650493	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54644000-54648000	Weak transcription	NH-A	brain
2	chr4:54644200-54648000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:54645200-54648000	Weak transcription	Fetal Stomach	stomach
5	chr4:54646400-54650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:54646600-54649200	Enhancers	Osteobl	bone
7	chr4:54646600-54650200	Enhancers	NHDF-Ad	bronchial
8	chr4:54646800-54649200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:54646800-54649600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:54647000-54648000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:54647000-54648000	Enhancers	NHLF	lung
12	chr4:54647000-54648400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:54647000-54648800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:54647000-54649400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:54647200-54647800	Flanking Active TSS	A549	lung
16	chr4:54647200-54649200	Enhancers	HepG2	liver
17	chr4:54647400-54648000	Enhancers	Liver	Liver
18	chr4:54647400-54649200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:54647600-54648400	Enhancers	HUVEC	blood vessel
20	chr4:54647600-54648800	Enhancers	Fetal Lung	lung

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