Variant report

Variant	rs7676596
Chromosome Location	chr4:54630239-54630240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11723162	0.82[ASN][1000 genomes]
rs1498830	0.96[ASN][1000 genomes]
rs2088582	0.94[ASN][1000 genomes]
rs2412499	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2590763	0.82[ASN][1000 genomes]
rs2616431	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616433	0.98[ASN][1000 genomes]
rs2616434	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4292386	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4864488	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4864820	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59481386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61202300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813393	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6816871	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6828755	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6831739	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6842780	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7378471	0.94[ASN][1000 genomes]
rs7655896	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694601	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs904414	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv527672	chr4:54626228-54637201	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54629000-54630400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:54629200-54630400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:54629200-54630400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54629200-54631200	Enhancers	NHDF-Ad	bronchial
5	chr4:54629200-54631800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:54629200-54634400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:54629400-54630400	Enhancers	NHLF	lung
8	chr4:54629400-54630400	Enhancers	Osteobl	bone
9	chr4:54629400-54631200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:54629400-54631800	Enhancers	Ovary	ovary
11	chr4:54629400-54633800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:54629600-54630800	Enhancers	Aorta	Aorta
13	chr4:54629600-54631000	Enhancers	Placenta	Placenta
14	chr4:54629600-54631600	Enhancers	HSMMtube	muscle
15	chr4:54629600-54631800	Enhancers	HSMM	muscle
16	chr4:54629600-54631800	Enhancers	NH-A	brain
17	chr4:54629600-54632000	Enhancers	Fetal Stomach	stomach
18	chr4:54629800-54630600	Enhancers	HMEC	breast
19	chr4:54629800-54630800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:54629800-54630800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:54630000-54630600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:54630000-54631800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr4:54630200-54630800	Bivalent Enhancer	Fetal Lung	lung
24	chr4:54630200-54631000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:54630200-54631600	Enhancers	Colon Smooth Muscle	Colon
26	chr4:54630200-54632200	Enhancers	Fetal Kidney	kidney

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