Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1498830	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2088582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2412499	0.98[ASN][1000 genomes]
rs2616431	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2616433	0.92[ASN][1000 genomes]
rs2616434	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4292386	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4864488	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4864820	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4864822	0.85[ASN][1000 genomes]
rs59481386	0.94[ASN][1000 genomes]
rs61202300	0.94[ASN][1000 genomes]
rs6813393	0.98[ASN][1000 genomes]
rs6816871	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828755	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6831739	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6842780	0.94[ASN][1000 genomes]
rs7655896	0.94[ASN][1000 genomes]
rs7676596	0.94[ASN][1000 genomes]
rs7694601	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs904414	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:54648400-54652400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54648400-54652800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:54648600-54655600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:54649000-54652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:54649200-54652400	Weak transcription	Osteobl	bone
7	chr4:54649600-54652800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:54650600-54654600	Enhancers	NHDF-Ad	bronchial
9	chr4:54651000-54653600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:54651000-54654200	Enhancers	Fetal Stomach	stomach
11	chr4:54651400-54653600	Enhancers	Ovary	ovary
12	chr4:54651400-54654400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:54651400-54654600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:54651800-54653800	Enhancers	NHLF	lung
15	chr4:54651800-54654200	Enhancers	Placenta	Placenta
16	chr4:54652000-54652400	Weak transcription	Fetal Lung	lung
17	chr4:54652000-54652600	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:54652000-54653600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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