Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1498830	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2088582	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2412499	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2616431	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616433	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616434	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4864488	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864820	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4864822	0.81[ASN][1000 genomes]
rs59481386	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61202300	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6813393	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6816871	0.96[ASN][1000 genomes]
rs6828755	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6831739	0.94[ASN][1000 genomes]
rs6842780	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7378471	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7655896	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7676596	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7694601	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs904414	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54633400-54643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54635800-54642800	Weak transcription	NHLF	lung
3	chr4:54636200-54643600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:54638200-54643000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:54638800-54643400	Weak transcription	Fetal Stomach	stomach

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