Variant report
| Variant | rs4867206 |
|---|---|
| Chromosome Location | chr5:29831936-29831937 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10520950 | 1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs10520951 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs12153594 | 1.00[CEU][hapmap] |
| rs12522268 | 1.00[CEU][hapmap] |
| rs12651967 | 0.84[ASN][1000 genomes] |
| rs12654016 | 0.81[ASN][1000 genomes] |
| rs12656237 | 0.84[ASN][1000 genomes] |
| rs12657245 | 0.81[ASN][1000 genomes] |
| rs12658382 | 0.84[ASN][1000 genomes] |
| rs12659873 | 1.00[CHB][hapmap];0.83[JPT][hapmap] |
| rs1428310 | 1.00[CEU][hapmap] |
| rs1428313 | 1.00[CEU][hapmap];0.91[TSI][hapmap] |
| rs1428319 | 1.00[CEU][hapmap] |
| rs1428320 | 1.00[CEU][hapmap] |
| rs1428322 | 1.00[CEU][hapmap] |
| rs1428344 | 1.00[CEU][hapmap] |
| rs16899404 | 1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs16899677 | 1.00[CHB][hapmap] |
| rs2052839 | 1.00[CEU][hapmap] |
| rs2115186 | 1.00[CEU][hapmap] |
| rs2925527 | 1.00[CEU][hapmap] |
| rs2972792 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4867210 | 1.00[CEU][hapmap] |
| rs57353106 | 0.81[ASN][1000 genomes] |
| rs6450724 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6881851 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73077041 | 0.81[ASN][1000 genomes] |
| rs73077048 | 0.81[ASN][1000 genomes] |
| rs73077049 | 0.81[ASN][1000 genomes] |
| rs73077055 | 0.81[ASN][1000 genomes] |
| rs73077059 | 0.81[ASN][1000 genomes] |
| rs73077062 | 0.81[ASN][1000 genomes] |
| rs7723603 | 1.00[CEU][hapmap];0.91[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016603 | chr5:29102713-29843965 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv537712 | chr5:29102713-29843965 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | esv3385368 | chr5:29548608-29910057 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:29827800-29832800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
