Variant report

Variant	rs4895979
Chromosome Location	chr6:133962467-133962468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1320114	0.84[EUR][1000 genomes]
rs2251873	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2256702	0.84[EUR][1000 genomes]
rs2459697	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636590	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636617	0.93[EUR][1000 genomes]
rs2636619	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636623	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636626	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2677827	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2677829	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2677832	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2677835	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7746271	0.80[EUR][1000 genomes]
rs9389090	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4895979	C6orf191	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133953800-133962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:133953800-133965800	Weak transcription	Osteobl	bone
3	chr6:133954400-133965800	Weak transcription	A549	lung
4	chr6:133957000-133966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:133959400-133965800	Weak transcription	NHLF	lung
6	chr6:133959400-133966000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:133962000-133962800	Enhancers	Fetal Kidney	kidney
8	chr6:133962200-133962600	Enhancers	Fetal Lung	lung
9	chr6:133962400-133962800	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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