Variant report

Variant	rs2677827
Chromosome Location	chr6:133926946-133926947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133925722..133928960-chr6:133929077..133930766,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11154736	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1320114	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1878550	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2251873	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2256702	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2459697	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636591	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636611	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636612	0.98[ASN][1000 genomes]
rs2636614	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636615	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636617	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636619	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636623	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2636626	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677812	0.87[ASN][1000 genomes]
rs2677825	0.82[ASN][1000 genomes]
rs2677829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677832	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677835	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677836	0.94[ASN][1000 genomes]
rs3021401	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4410743	0.91[ASN][1000 genomes]
rs4895979	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62427502	0.83[ASN][1000 genomes]
rs6920911	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922365	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7746271	0.93[ASN][1000 genomes]
rs9375970	0.83[ASN][1000 genomes]
rs9385655	0.84[ASN][1000 genomes]
rs9385656	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9385657	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389090	0.80[ASN][1000 genomes]
rs9402519	0.83[ASN][1000 genomes]
rs9493660	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133925200-133930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133925400-133928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133925400-133928400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133926400-133927000	Enhancers	Adipose Nuclei	Adipose
5	chr6:133926600-133930000	Enhancers	Fetal Lung	lung

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