Variant report

Variant	rs2677836
Chromosome Location	chr6:133951989-133951990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11154736	0.82[ASN][1000 genomes]
rs1320113	0.89[EUR][1000 genomes]
rs1320114	0.81[ASN][1000 genomes]
rs2251873	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2256702	0.84[ASN][1000 genomes]
rs2459697	0.94[ASN][1000 genomes]
rs2636590	0.94[ASN][1000 genomes]
rs2636591	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636606	0.89[EUR][1000 genomes]
rs2636611	0.83[ASN][1000 genomes]
rs2636612	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636614	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636615	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636617	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636619	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636623	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636626	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2677812	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2677825	0.93[EUR][1000 genomes]
rs2677827	0.94[ASN][1000 genomes]
rs2677829	0.94[ASN][1000 genomes]
rs2677832	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677835	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3021401	0.82[ASN][1000 genomes]
rs4410743	0.92[ASN][1000 genomes]
rs62427499	0.84[EUR][1000 genomes]
rs62427502	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7746271	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375970	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9385655	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9385656	0.82[ASN][1000 genomes]
rs9385657	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389090	0.82[ASN][1000 genomes]
rs9402519	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9493660	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2677836	C6orf191	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133944400-133962000	Weak transcription	Fetal Kidney	kidney
2	chr6:133944600-133952400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:133945200-133952000	Weak transcription	A549	lung
4	chr6:133945200-133952400	Weak transcription	NHDF-Ad	bronchial
5	chr6:133945400-133952400	Weak transcription	Ovary	ovary
6	chr6:133945800-133952000	Weak transcription	Osteobl	bone
7	chr6:133945800-133952400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:133949600-133952400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:133950800-133954000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:133950800-133954600	Enhancers	Hela-S3	cervix
11	chr6:133951200-133954000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:133951400-133953400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:133951600-133953200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:133951600-133954000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:133951600-133954000	Enhancers	Fetal Lung	lung
16	chr6:133951800-133953000	Enhancers	HSMM	muscle
17	chr6:133951800-133953800	Enhancers	NH-A	brain

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