Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11154736	0.81[ASN][1000 genomes]
rs2256702	0.81[ASN][1000 genomes]
rs2459696	0.96[ASN][1000 genomes]
rs2636591	0.92[EUR][1000 genomes]
rs2636606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636611	0.81[ASN][1000 genomes]
rs2636612	0.88[EUR][1000 genomes]
rs2636614	0.91[EUR][1000 genomes]
rs2636615	0.91[EUR][1000 genomes]
rs2677812	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677825	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2677836	0.89[EUR][1000 genomes]
rs3021401	0.81[ASN][1000 genomes]
rs62427499	0.88[EUR][1000 genomes]
rs62427502	0.88[EUR][1000 genomes]
rs7746271	0.86[EUR][1000 genomes]
rs9375970	0.88[EUR][1000 genomes]
rs9385655	0.88[EUR][1000 genomes]
rs9385656	0.81[ASN][1000 genomes]
rs9385657	0.92[EUR][1000 genomes]
rs9402519	0.87[EUR][1000 genomes]
rs9493660	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133913400-133917400	Enhancers	Fetal Lung	lung
3	chr6:133915200-133917400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:133915200-133917400	Enhancers	A549	lung
5	chr6:133915800-133917200	Enhancers	Hela-S3	cervix
6	chr6:133916000-133925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133916200-133917200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:133916800-133917200	Enhancers	NHLF	lung
9	chr6:133916800-133917400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search: