Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11154736	0.81[ASN][1000 genomes]
rs1320113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256702	0.81[ASN][1000 genomes]
rs2459696	0.96[ASN][1000 genomes]
rs2636591	0.92[EUR][1000 genomes]
rs2636611	0.81[ASN][1000 genomes]
rs2636612	0.88[EUR][1000 genomes]
rs2636614	0.92[EUR][1000 genomes]
rs2636615	0.92[EUR][1000 genomes]
rs2677812	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677825	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2677836	0.89[EUR][1000 genomes]
rs3021401	0.81[ASN][1000 genomes]
rs62427499	0.88[EUR][1000 genomes]
rs62427502	0.89[EUR][1000 genomes]
rs7746271	0.86[EUR][1000 genomes]
rs9375970	0.89[EUR][1000 genomes]
rs9385655	0.89[EUR][1000 genomes]
rs9385656	0.81[ASN][1000 genomes]
rs9385657	0.92[EUR][1000 genomes]
rs9402519	0.88[EUR][1000 genomes]
rs9493660	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133912400-133915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:133912600-133915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133912600-133916800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:133912800-133915800	Weak transcription	NHDF-Ad	bronchial
6	chr6:133913000-133916800	Weak transcription	NHLF	lung
7	chr6:133913400-133917400	Enhancers	Fetal Lung	lung
8	chr6:133913600-133915400	Weak transcription	Osteobl	bone
9	chr6:133913600-133916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:133913800-133915600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:133913800-133915800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:133913800-133917000	Enhancers	Fetal Stomach	stomach
13	chr6:133914000-133915200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:133914000-133915800	Weak transcription	Hela-S3	cervix
15	chr6:133914800-133915200	Weak transcription	A549	lung

Quick Search: