Variant report

Variant	rs9375970
Chromosome Location	chr6:133900751-133900752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11154736	0.95[ASN][1000 genomes]
rs12664733	0.86[AFR][1000 genomes]
rs1320113	0.88[EUR][1000 genomes]
rs1320114	0.93[ASN][1000 genomes]
rs1878550	0.92[ASN][1000 genomes]
rs2256702	0.93[ASN][1000 genomes]
rs2327349	0.84[ASN][1000 genomes]
rs2459697	0.83[ASN][1000 genomes]
rs2636590	0.83[ASN][1000 genomes]
rs2636591	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2636606	0.89[EUR][1000 genomes]
rs2636611	0.94[ASN][1000 genomes]
rs2636612	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636614	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2636615	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2636617	0.82[ASN][1000 genomes]
rs2636619	0.82[ASN][1000 genomes]
rs2636623	0.81[ASN][1000 genomes]
rs2677812	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677825	0.85[EUR][1000 genomes]
rs2677827	0.83[ASN][1000 genomes]
rs2677829	0.83[ASN][1000 genomes]
rs2677832	0.82[ASN][1000 genomes]
rs2677836	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3021401	0.95[ASN][1000 genomes]
rs62427499	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62427501	0.86[AFR][1000 genomes]
rs62427502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907242	0.81[AFR][1000 genomes]
rs6908856	0.84[EUR][1000 genomes]
rs6920911	0.96[ASN][1000 genomes]
rs6922365	0.99[ASN][1000 genomes]
rs7746271	0.82[EUR][1000 genomes]
rs9385655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385656	0.95[ASN][1000 genomes]
rs9385657	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9402519	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493660	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv818457	chr6:133899539-133905744	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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