Variant report

Variant	rs1878550
Chromosome Location	chr6:133907177-133907178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11154736	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1320114	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2251873	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2256702	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2327349	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2459696	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459697	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2636590	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2636591	0.83[ASN][1000 genomes]
rs2636611	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636612	0.83[ASN][1000 genomes]
rs2636614	0.83[ASN][1000 genomes]
rs2636615	0.83[ASN][1000 genomes]
rs2636617	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2636619	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2636623	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636626	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2677812	0.95[ASN][1000 genomes]
rs2677827	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2677829	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2677832	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2677835	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3021401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4410743	0.80[ASN][1000 genomes]
rs62427499	0.87[ASN][1000 genomes]
rs62427502	0.92[ASN][1000 genomes]
rs6920911	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6922365	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375970	0.92[ASN][1000 genomes]
rs9385655	0.94[ASN][1000 genomes]
rs9385656	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385657	0.83[ASN][1000 genomes]
rs9402519	0.92[ASN][1000 genomes]
rs9493660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133904800-133909800	Enhancers	Fetal Lung	lung
4	chr6:133905400-133908200	Weak transcription	NHLF	lung
5	chr6:133906000-133908800	Weak transcription	HSMM	muscle
6	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:133906600-133907200	Enhancers	Fetal Kidney	kidney
8	chr6:133906600-133908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133906800-133907200	Weak transcription	A549	lung

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