Variant report

Variant	rs1320114
Chromosome Location	chr6:133923890-133923891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11154736	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1878550	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2251873	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2256702	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327349	0.81[ASN][1000 genomes]
rs2459696	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2459697	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2636590	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2636591	0.85[ASN][1000 genomes]
rs2636611	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636612	0.85[ASN][1000 genomes]
rs2636614	0.85[ASN][1000 genomes]
rs2636615	0.85[ASN][1000 genomes]
rs2636617	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2636619	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2636623	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2636626	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2677812	0.94[ASN][1000 genomes]
rs2677827	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2677829	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2677832	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2677835	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677836	0.81[ASN][1000 genomes]
rs3021401	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4410743	0.82[ASN][1000 genomes]
rs4895979	0.84[EUR][1000 genomes]
rs62427499	0.87[ASN][1000 genomes]
rs62427502	0.93[ASN][1000 genomes]
rs6920911	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6922365	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375970	0.93[ASN][1000 genomes]
rs9385655	0.94[ASN][1000 genomes]
rs9385656	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9385657	0.85[ASN][1000 genomes]
rs9402519	0.93[ASN][1000 genomes]
rs9493660	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv437014	chr6:133919776-133924082	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133916000-133925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133917200-133925200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133923800-133926600	Weak transcription	Fetal Lung	lung

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