Variant report

Variant	rs2459696
Chromosome Location	chr6:133910951-133910952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11154736	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1320113	0.96[ASN][1000 genomes]
rs1320114	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1878550	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2256702	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2327349	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2459697	0.80[EUR][1000 genomes]
rs2636590	0.80[EUR][1000 genomes]
rs2636606	0.96[ASN][1000 genomes]
rs2636611	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677812	0.80[ASN][1000 genomes]
rs2677825	0.85[ASN][1000 genomes]
rs2677829	0.80[EUR][1000 genomes]
rs3021401	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6920911	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6922365	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9385656	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9493660	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133907200-133911400	Weak transcription	Fetal Kidney	kidney
4	chr6:133908200-133911800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:133908400-133911800	Weak transcription	Fetal Stomach	stomach
6	chr6:133908600-133911600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:133908600-133911600	Weak transcription	HSMMtube	muscle
8	chr6:133908600-133911800	Weak transcription	NHLF	lung
9	chr6:133909600-133911400	Weak transcription	HSMM	muscle
10	chr6:133909600-133912200	Weak transcription	NHDF-Ad	bronchial
11	chr6:133909800-133911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133909800-133911600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:133909800-133911600	Weak transcription	Osteobl	bone
14	chr6:133909800-133912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:133909800-133912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:133910400-133913400	Weak transcription	Fetal Lung	lung
17	chr6:133910800-133911000	Flanking Active TSS	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links