Variant report

Variant	rs2459697
Chromosome Location	chr6:133931770-133931771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133929403..133932343-chr6:133932388..133934855,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11154736	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1320114	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1878550	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2251873	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2256702	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2459696	0.80[EUR][1000 genomes]
rs2636590	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636591	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636611	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636612	0.98[ASN][1000 genomes]
rs2636614	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636615	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636617	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636619	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636623	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2636626	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677812	0.87[ASN][1000 genomes]
rs2677825	0.82[ASN][1000 genomes]
rs2677827	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677832	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677835	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677836	0.94[ASN][1000 genomes]
rs3021401	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4410743	0.91[ASN][1000 genomes]
rs4895979	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427502	0.83[ASN][1000 genomes]
rs6920911	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922365	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7746271	0.93[ASN][1000 genomes]
rs9375970	0.83[ASN][1000 genomes]
rs9385655	0.84[ASN][1000 genomes]
rs9385656	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9385657	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389090	0.80[ASN][1000 genomes]
rs9402519	0.83[ASN][1000 genomes]
rs9493660	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133927000-133932000	Weak transcription	Adipose Nuclei	Adipose
2	chr6:133929000-133935600	Enhancers	Hela-S3	cervix
3	chr6:133930000-133933000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133930200-133932400	Enhancers	HSMM	muscle
5	chr6:133930400-133932400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:133930400-133932600	Enhancers	NHLF	lung
7	chr6:133930600-133931800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:133930600-133932000	Enhancers	HMEC	breast
9	chr6:133930600-133933000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:133930600-133933000	Enhancers	NHDF-Ad	bronchial
11	chr6:133930800-133931800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:133930800-133932200	Enhancers	HSMMtube	muscle
13	chr6:133930800-133932800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:133931200-133932400	Flanking Active TSS	A549	lung
15	chr6:133931200-133934000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:133931200-133934200	Weak transcription	Fetal Kidney	kidney
17	chr6:133931400-133931800	Flanking Active TSS	Osteobl	bone
18	chr6:133931400-133932200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:133931400-133934800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:133931600-133931800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr6:133931600-133931800	Flanking Active TSS	NH-A	brain
22	chr6:133931600-133932000	Weak transcription	Fetal Lung	lung
23	chr6:133931600-133932200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:133931600-133934200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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