Variant report

Variant	rs2677812
Chromosome Location	chr6:133912335-133912336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11154736	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1320113	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1320114	0.94[ASN][1000 genomes]
rs1878550	0.95[ASN][1000 genomes]
rs2251873	0.83[ASN][1000 genomes]
rs2256702	0.97[ASN][1000 genomes]
rs2459696	0.80[ASN][1000 genomes]
rs2459697	0.87[ASN][1000 genomes]
rs2636590	0.87[ASN][1000 genomes]
rs2636591	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636606	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2636611	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2636612	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2636614	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636615	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636617	0.86[ASN][1000 genomes]
rs2636619	0.86[ASN][1000 genomes]
rs2636623	0.85[ASN][1000 genomes]
rs2636626	0.83[ASN][1000 genomes]
rs2677825	0.86[EUR][1000 genomes]
rs2677827	0.87[ASN][1000 genomes]
rs2677829	0.87[ASN][1000 genomes]
rs2677832	0.86[ASN][1000 genomes]
rs2677835	0.82[ASN][1000 genomes]
rs2677836	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3021401	0.98[ASN][1000 genomes]
rs4410743	0.82[ASN][1000 genomes]
rs62427499	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62427502	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6908856	0.83[EUR][1000 genomes]
rs6920911	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6922365	0.94[ASN][1000 genomes]
rs7746271	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375970	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385655	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385656	0.98[ASN][1000 genomes]
rs9385657	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9402519	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9493660	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2677812	C6orf191	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133910400-133913400	Weak transcription	Fetal Lung	lung
2	chr6:133911200-133914000	Enhancers	HMEC	breast
3	chr6:133911400-133912400	Enhancers	Fetal Kidney	kidney
4	chr6:133911400-133912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:133911400-133913800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:133911400-133913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:133911600-133912400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:133911600-133912600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133911600-133912800	Enhancers	Hela-S3	cervix
10	chr6:133911600-133913600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:133911600-133914000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:133911800-133912400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:133911800-133912400	Enhancers	Fetal Stomach	stomach
14	chr6:133911800-133912600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:133911800-133913000	Flanking Active TSS	A549	lung
16	chr6:133911800-133913000	Enhancers	NHLF	lung
17	chr6:133912000-133912400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:133912000-133912400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:133912000-133913600	Enhancers	NHEK	skin
20	chr6:133912000-133913800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:133912000-133913800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:133912200-133912400	Enhancers	HSMM	muscle
23	chr6:133912200-133912600	Flanking Active TSS	Osteobl	bone
24	chr6:133912200-133912800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links