Variant report
| Variant | rs62427499 |
|---|---|
| Chromosome Location | chr6:133898633-133898634 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11154736 | 0.89[ASN][1000 genomes] |
| rs12664733 | 0.86[AFR][1000 genomes] |
| rs1320113 | 0.88[EUR][1000 genomes] |
| rs1320114 | 0.87[ASN][1000 genomes] |
| rs1878550 | 0.87[ASN][1000 genomes] |
| rs2256702 | 0.87[ASN][1000 genomes] |
| rs2327349 | 0.86[ASN][1000 genomes] |
| rs2636591 | 0.87[EUR][1000 genomes] |
| rs2636606 | 0.88[EUR][1000 genomes] |
| rs2636611 | 0.89[ASN][1000 genomes] |
| rs2636612 | 0.83[EUR][1000 genomes] |
| rs2636614 | 0.86[EUR][1000 genomes] |
| rs2636615 | 0.86[EUR][1000 genomes] |
| rs2677812 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2677825 | 0.84[EUR][1000 genomes] |
| rs2677836 | 0.84[EUR][1000 genomes] |
| rs3021401 | 0.89[ASN][1000 genomes] |
| rs62427501 | 0.86[AFR][1000 genomes] |
| rs62427502 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6907242 | 0.81[AFR][1000 genomes] |
| rs6908856 | 0.83[EUR][1000 genomes] |
| rs6920911 | 0.94[ASN][1000 genomes] |
| rs6922365 | 0.93[ASN][1000 genomes] |
| rs7746271 | 0.82[EUR][1000 genomes] |
| rs9375970 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9385655 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9385656 | 0.89[ASN][1000 genomes] |
| rs9385657 | 0.87[EUR][1000 genomes] |
| rs9402519 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9493660 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886682 | chr6:133892208-133943732 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:133895600-133908000 | Weak transcription | NHDF-Ad | bronchial |
| 2 | chr6:133898600-133911400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
