Variant report

Variant	rs2251873
Chromosome Location	chr6:133950877-133950878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11154736	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1320114	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1878550	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2256702	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2459697	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636590	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636591	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636611	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2636612	0.94[ASN][1000 genomes]
rs2636614	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636615	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636617	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636619	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636623	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636626	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677812	0.83[ASN][1000 genomes]
rs2677827	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677829	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677836	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3021401	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4410743	0.94[ASN][1000 genomes]
rs4895979	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6920911	0.81[EUR][1000 genomes]
rs6922365	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7746271	0.96[ASN][1000 genomes]
rs9385655	0.81[ASN][1000 genomes]
rs9385656	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385657	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389090	0.84[ASN][1000 genomes]
rs9493660	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133944400-133951800	Weak transcription	NH-A	brain
2	chr6:133944400-133962000	Weak transcription	Fetal Kidney	kidney
3	chr6:133944600-133952400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:133945200-133952000	Weak transcription	A549	lung
5	chr6:133945200-133952400	Weak transcription	NHDF-Ad	bronchial
6	chr6:133945400-133952400	Weak transcription	Ovary	ovary
7	chr6:133945800-133952000	Weak transcription	Osteobl	bone
8	chr6:133945800-133952400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133948400-133951600	Weak transcription	Fetal Lung	lung
10	chr6:133948600-133951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:133949600-133952400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:133950800-133954000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:133950800-133954600	Enhancers	Hela-S3	cervix

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