The 2.0 version of rSNPBase

Variant report

Variant rs4912275
Chromosome Location chr1:56912310-56912311
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56905400-56942600 Weak transcription Gastric stomach
2 chr1:56905600-56914800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:56906000-56913600 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:56906000-56914800 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr1:56908400-56916800 Weak transcription Brain Anterior Caudate brain
6 chr1:56909200-56915800 Enhancers HepG2 liver
7 chr1:56910000-56916200 Enhancers Liver Liver
8 chr1:56910400-56912800 Enhancers Primary monocytes fromperipheralblood blood
9 chr1:56911200-56913200 Enhancers Primary neutrophils fromperipheralblood blood
10 chr1:56911400-56913000 Enhancers Monocytes-CD14+_RO01746 blood
11 chr1:56911800-56913000 Enhancers Fetal Muscle Leg muscle
12 chr1:56911800-56913400 Enhancers Fetal Stomach stomach
13 chr1:56911800-56913400 Enhancers Psoas Muscle Psoas
14 chr1:56911800-56913600 Enhancers Duodenum Smooth Muscle Duodenum
15 chr1:56911800-56914800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:56912000-56912400 Enhancers Colon Smooth Muscle Colon
17 chr1:56912000-56912600 Enhancers NH-A brain
18 chr1:56912000-56912800 Enhancers Esophagus oesophagus
19 chr1:56912000-56912800 Enhancers Fetal Lung lung
20 chr1:56912000-56912800 Enhancers Placenta Amnion Placenta Amnion
21 chr1:56912000-56912800 Enhancers Rectal Mucosa Donor 31 rectum
22 chr1:56912000-56912800 Enhancers Osteobl bone
23 chr1:56912000-56913000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:56912000-56913000 Enhancers NHLF lung
25 chr1:56912000-56913200 Enhancers Rectal Smooth Muscle rectum
26 chr1:56912000-56913600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:56912000-56913600 Enhancers Skeletal Muscle Male skeletal muscle
28 chr1:56912000-56913800 Enhancers Right Ventricle heart
29 chr1:56912000-56913800 Enhancers Skeletal Muscle Female skeletal muscle
30 chr1:56912000-56914400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:56912000-56915000 Enhancers Adipose Nuclei Adipose
32 chr1:56912000-56915200 Enhancers NHDF-Ad bronchial
33 chr1:56912000-56916200 Enhancers Right Atrium heart
34 chr1:56912000-56916400 Enhancers Hela-S3 cervix
35 chr1:56912000-56916600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:56912000-56916600 Enhancers Left Ventricle heart
37 chr1:56912200-56912400 Enhancers ES-WA7 Cell Line embryonic stem cell
38 chr1:56912200-56912400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr1:56912200-56912400 Enhancers Duodenum Mucosa Duodenum
40 chr1:56912200-56912400 Enhancers Fetal Kidney kidney
41 chr1:56912200-56912800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:56912200-56912800 Enhancers Muscle Satellite Cultured Cells --
43 chr1:56912200-56912800 Enhancers Brain Substantia Nigra brain
44 chr1:56912200-56912800 Enhancers Fetal Heart heart
45 chr1:56912200-56912800 Enhancers Fetal Muscle Trunk muscle
46 chr1:56912200-56912800 Enhancers Lung lung
47 chr1:56912200-56912800 Enhancers Ovary ovary
48 chr1:56912200-56912800 Flanking Active TSS Stomach Smooth Muscle stomach
49 chr1:56912200-56912800 Enhancers Spleen Spleen
50 chr1:56912200-56913000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015