The 2.0 version of rSNPBase

Variant report

Variant rs72664313
Chromosome Location chr1:56957799-56957800
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56943800-56959400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:56944400-56959600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:56944600-56957800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:56944800-56960800 Weak transcription Fetal Kidney kidney
5 chr1:56948800-56965200 Weak transcription Brain Angular Gyrus brain
6 chr1:56950400-56959400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:56951000-56959000 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr1:56953600-56959400 Weak transcription Aorta Aorta
9 chr1:56955200-56961000 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr1:56955400-56960000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:56955600-56957800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:56956000-56958400 Enhancers HUVEC blood vessel
13 chr1:56956000-56960800 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:56956200-56957800 Enhancers Small Intestine intestine
15 chr1:56956200-56958200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:56956200-56958200 Enhancers Brain Anterior Caudate brain
17 chr1:56956200-56958800 Enhancers Liver Liver
18 chr1:56956400-56957800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:56956400-56958400 Enhancers Brain Hippocampus Middle brain
20 chr1:56956400-56961000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:56956600-56959600 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:56956600-56959800 Weak transcription Fetal Thymus thymus
23 chr1:56956600-56961200 Weak transcription A549 lung
24 chr1:56956800-56958200 Enhancers Adipose Nuclei Adipose
25 chr1:56957000-56958000 Enhancers Brain Substantia Nigra brain
26 chr1:56957000-56958000 Enhancers Duodenum Smooth Muscle Duodenum
27 chr1:56957000-56958000 Enhancers Ovary ovary
28 chr1:56957000-56958000 Enhancers Osteobl bone
29 chr1:56957000-56958200 Enhancers Fetal Lung lung
30 chr1:56957000-56958200 Strong transcription HSMM muscle
31 chr1:56957000-56959600 Strong transcription Fetal Intestine Large intestine
32 chr1:56957200-56957800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:56957200-56958200 Enhancers HUES64 Cell Line embryonic stem cell
34 chr1:56957200-56958200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:56957200-56958200 Enhancers Brain Inferior Temporal Lobe brain
36 chr1:56957200-56958200 Enhancers Colon Smooth Muscle Colon
37 chr1:56957200-56958200 Genic enhancers Fetal Muscle Leg muscle
38 chr1:56957200-56958200 Enhancers Skeletal Muscle Female skeletal muscle
39 chr1:56957200-56958400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
40 chr1:56957200-56958400 Genic enhancers Muscle Satellite Cultured Cells --
41 chr1:56957200-56958400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:56957200-56958400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
43 chr1:56957200-56958400 Enhancers Esophagus oesophagus
44 chr1:56957200-56958400 Genic enhancers Fetal Muscle Trunk muscle
45 chr1:56957200-56958400 Enhancers Psoas Muscle Psoas
46 chr1:56957200-56958400 Genic enhancers Right Ventricle heart
47 chr1:56957200-56962400 Genic enhancers Placenta Placenta
48 chr1:56957400-56957800 Enhancers Sigmoid Colon Sigmoid Colon
49 chr1:56957400-56958000 Enhancers H1 Cell Line embryonic stem cell
50 chr1:56957400-56958000 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015