Variant report

Variant	rs56027745
Chromosome Location	chr1:56922419-56922420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11206807	1.00[ASN][1000 genomes]
rs11206808	1.00[ASN][1000 genomes]
rs12122628	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137498	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17406943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780865	1.00[ASN][1000 genomes]
rs35064883	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912172	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912275	1.00[ASN][1000 genomes]
rs4912305	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912307	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72662266	1.00[ASN][1000 genomes]
rs72662267	1.00[ASN][1000 genomes]
rs72662283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662289	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662291	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662298	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72664306	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72664313	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72664316	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914837	1.00[ASN][1000 genomes]
rs9437005	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56912800-56923400	Weak transcription	Spleen	Spleen
3	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
4	chr1:56915200-56935800	Weak transcription	NHLF	lung
5	chr1:56918000-56922600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:56918600-56926600	Weak transcription	Fetal Thymus	thymus
7	chr1:56919000-56923200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:56919200-56927200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:56919200-56930000	Weak transcription	NHDF-Ad	bronchial
10	chr1:56919600-56922600	Weak transcription	Fetal Heart	heart
11	chr1:56919600-56922800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:56919600-56923400	Weak transcription	Left Ventricle	heart
13	chr1:56919600-56923600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:56919800-56922600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:56919800-56923200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:56919800-56926600	Weak transcription	Liver	Liver
17	chr1:56919800-56927000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:56919800-56934200	Weak transcription	Fetal Stomach	stomach
19	chr1:56922000-56922800	Enhancers	A549	lung
20	chr1:56922000-56923200	Enhancers	HepG2	liver
21	chr1:56922000-56923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:56922000-56924400	Enhancers	HUVEC	blood vessel
23	chr1:56922200-56922600	Enhancers	Placenta	Placenta
24	chr1:56922200-56922600	Enhancers	Psoas Muscle	Psoas
25	chr1:56922200-56922600	Enhancers	Small Intestine	intestine
26	chr1:56922200-56922600	Flanking Active TSS	Hela-S3	cervix
27	chr1:56922200-56922600	Enhancers	NH-A	brain
28	chr1:56922200-56922800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:56922200-56922800	Enhancers	Fetal Muscle Leg	muscle
30	chr1:56922200-56922800	Enhancers	Right Ventricle	heart
31	chr1:56922200-56924000	Enhancers	Lung	lung
32	chr1:56922200-56924000	Enhancers	Right Atrium	heart
33	chr1:56922400-56922600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr1:56922400-56922600	Enhancers	Stomach Smooth Muscle	stomach
35	chr1:56922400-56922800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:56922400-56923000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr1:56922400-56923200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr1:56922400-56923200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr1:56922400-56923800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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