The 2.0 version of rSNPBase

Variant report

Variant rs4912305
Chromosome Location chr1:56958638-56958639
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56943800-56959400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:56944400-56959600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:56944800-56960800 Weak transcription Fetal Kidney kidney
4 chr1:56948800-56965200 Weak transcription Brain Angular Gyrus brain
5 chr1:56950400-56959400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr1:56951000-56959000 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr1:56953600-56959400 Weak transcription Aorta Aorta
8 chr1:56955200-56961000 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr1:56955400-56960000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:56956000-56960800 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:56956200-56958800 Enhancers Liver Liver
12 chr1:56956400-56961000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr1:56956600-56959600 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr1:56956600-56959800 Weak transcription Fetal Thymus thymus
15 chr1:56956600-56961200 Weak transcription A549 lung
16 chr1:56957000-56959600 Strong transcription Fetal Intestine Large intestine
17 chr1:56957200-56962400 Genic enhancers Placenta Placenta
18 chr1:56957400-56958800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:56957400-56963800 Genic enhancers NHDF-Ad bronchial
20 chr1:56957400-56971800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:56957600-56959200 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr1:56957600-56959200 Weak transcription Stomach Mucosa stomach
23 chr1:56957600-56959600 Weak transcription Brain Cingulate Gyrus brain
24 chr1:56957600-56959600 Weak transcription HSMMtube muscle
25 chr1:56957600-56959800 Weak transcription Stomach Smooth Muscle stomach
26 chr1:56957600-56960000 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr1:56957600-56961000 Weak transcription Duodenum Mucosa Duodenum
28 chr1:56957600-56961200 Weak transcription NH-A brain
29 chr1:56957600-56971800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:56957800-56959400 Weak transcription Rectal Smooth Muscle rectum
31 chr1:56957800-56961000 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:56957800-56961600 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:56957800-56963800 Strong transcription Cortex derived primary cultured neurospheres brain
34 chr1:56957800-56963800 Weak transcription Small Intestine intestine
35 chr1:56957800-56971800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:56957800-56975600 Weak transcription Fetal Brain Female brain
37 chr1:56958000-56959200 Weak transcription Osteobl bone
38 chr1:56958000-56959400 Weak transcription Ovary ovary
39 chr1:56958000-56959600 Weak transcription H1 Cell Line embryonic stem cell
40 chr1:56958000-56959600 Weak transcription Brain Substantia Nigra brain
41 chr1:56958000-56959800 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr1:56958000-56960000 Weak transcription Pancreas Pancrea
43 chr1:56958000-56961000 Weak transcription H9 Cell Line embryonic stem cell
44 chr1:56958000-56961000 Weak transcription Gastric stomach
45 chr1:56958000-56961000 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:56958000-56961000 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr1:56958000-56975600 Weak transcription ES-WA7 Cell Line embryonic stem cell
48 chr1:56958000-56977000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr1:56958200-56959000 Weak transcription HSMM muscle
50 chr1:56958200-56959200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015