Variant report

Variant	rs4925115
Chromosome Location	chr17:17721457-17721458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:17720512-17721872	GM12878	blood:	n/a	n/a
2	POLR2A	chr17:17720843-17722117	GM12892	blood:	n/a	n/a
3	POLR2A	chr17:17719588-17723414	PBDE	blood:	n/a	n/a
4	POLR2A	chr17:17721192-17721771	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr17:17721220-17722701	NB4	blood:	n/a	n/a
6	POLR2A	chr17:17720791-17721469	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr17:17720781-17723571	MCF-7	breast:	n/a	n/a
8	POLR2A	chr17:17719592-17722028	K562	blood:	n/a	n/a
9	POLR2A	chr17:17720502-17721497	U87	brain:	n/a	n/a
10	POLR2A	chr17:17721411-17721740	GM12878	blood:	n/a	n/a
11	POLR2A	chr17:17720875-17721475	GM12878	blood:	n/a	n/a
12	POLR2A	chr17:17717666-17722113	H1-neurons	neurons:	n/a	n/a
13	EGR1	chr17:17721255-17721470	K562	blood:	n/a	n/a
14	MAZ	chr17:17721300-17721659	K562	blood:	n/a	n/a
15	POLR2A	chr17:17712814-17721696	PFSK-1	brain:	n/a	n/a
16	POLR2A	chr17:17720963-17722481	K562	blood:	n/a	n/a
17	POLR2A	chr17:17721255-17722049	HepG2	liver:	n/a	n/a
18	POLR2A	chr17:17720942-17722105	ECC-1	luminal epithelium:	n/a	n/a
19	POLR2A	chr17:17712934-17723995	K562	blood:	n/a	n/a
20	POLR2A	chr17:17721425-17721867	H1-neurons	neurons:	n/a	n/a
21	POLR2A	chr17:17721048-17721491	U87	brain:	n/a	n/a
22	POLR2A	chr17:17717255-17724732	HepG2	liver:	n/a	n/a
23	POLR2A	chr17:17721056-17721787	HepG2	liver:	n/a	n/a
24	POLR2A	chr17:17719476-17723566	K562	blood:	n/a	n/a
25	IRF1	chr17:17721361-17721637	K562	blood:	n/a	n/a
26	POLR2A	chr17:17719497-17723428	GM12892	blood:	n/a	n/a
27	POLR2A	chr17:17719452-17723424	K562	blood:	n/a	n/a
28	POLR2A	chr17:17714780-17723367	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr17:17712185-17727861	K562	blood:	n/a	n/a
30	POLR2A	chr17:17719413-17722170	PFSK-1	brain:	n/a	n/a
31	POLR2A	chr17:17721448-17721691	HUVEC	blood vessel:	n/a	n/a
32	POLR2A	chr17:17718395-17722280	HepG2	liver:	n/a	n/a
33	CEBPB	chr17:17721350-17722036	A549	lung:	n/a	n/a
34	POLR2A	chr17:17714723-17724950	K562	blood:	n/a	n/a
35	POLR2A	chr17:17720060-17721485	HCT-116	colon:	n/a	n/a
36	POLR2A	chr17:17720398-17722189	HCT-116	colon:	n/a	n/a
37	BCL3	chr17:17721005-17721733	A549	lung:	n/a	n/a
38	POLR2A	chr17:17721056-17721813	PANC-1	pancreas:	n/a	n/a
39	PML	chr17:17721454-17722310	K562	blood:	n/a	n/a
40	POLR2A	chr17:17719626-17722252	K562	blood:	n/a	n/a
41	POLR2A	chr17:17720811-17722316	Hela-S3	cervix:	n/a	n/a
42	TCF12	chr17:17721408-17722308	A549	lung:	n/a	n/a
43	POLR2A	chr17:17714848-17725293	A549	lung:	n/a	n/a
44	POLR2A	chr17:17720998-17721465	Hela-S3	cervix:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17583519..17585283-chr17:17719170..17722055,2	MCF-7	breast:
2	chr17:17719864..17722423-chr17:17774275..17776633,2	K562	blood:
3	chr17:17584474..17587446-chr17:17720269..17722303,2	K562	blood:

No data

Variant related genes	Relation type
MIR33B	TF binding region
SREBF1	TF binding region
ENSG00000175662	Chromatin interaction
ENSG00000108557	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1052299	0.91[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs11078400	0.82[CEU][hapmap]
rs1108648	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs11649804	0.90[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap]
rs11652144	0.81[EUR][1000 genomes]
rs11652881	0.95[CEU][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs11654081	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs11656665	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11657130	0.82[EUR][1000 genomes]
rs11657423	0.95[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs11868035	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12453837	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12938501	0.82[EUR][1000 genomes]
rs12941039	0.82[CEU][hapmap]
rs12946746	0.83[EUR][1000 genomes]
rs12946913	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12952723	0.82[EUR][1000 genomes]
rs16960744	0.91[CEU][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs1889018	0.95[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs2236513	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs2297508	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2350976	0.91[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs3183702	0.91[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs3744113	0.81[EUR][1000 genomes]
rs3744115	0.86[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs3818717	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs4924822	0.86[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs4924823	0.82[CEU][hapmap]
rs4925114	0.95[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4925116	0.82[EUR][1000 genomes]
rs4925119	0.91[CEU][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4925120	0.91[CEU][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap]
rs7359509	0.95[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7501812	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs7503747	0.83[EUR][1000 genomes]
rs8066560	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8067439	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs8078756	0.81[EUR][1000 genomes]
rs8079321	0.82[CEU][hapmap]
rs8080061	0.82[CEU][hapmap]
rs9891957	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs9894257	0.80[AMR][1000 genomes]
rs9899634	0.95[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs9902941	0.95[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs9906673	0.81[EUR][1000 genomes]
rs9907246	0.82[CEU][hapmap]
rs9907287	0.82[CEU][hapmap]
rs9915248	0.91[CEU][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs9915776	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
16	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
17	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
18	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
21	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
22	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
25	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
27	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
28	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
29	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
30	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
31	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
32	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
33	nsv907767	chr17:17709136-17733760	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
34	nsv907768	chr17:17709136-17747289	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4925115	TOM1L2	cis	parietal	SCAN
rs4925115	TOM1L2	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17695400-17723800	Strong transcription	Dnd41	blood
2	chr17:17707000-17723000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:17707400-17722400	Weak transcription	Primary B cells from cord blood	blood
4	chr17:17708000-17723600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr17:17710000-17721800	Weak transcription	HSMM	muscle
6	chr17:17710200-17724400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:17711800-17721600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr17:17712800-17724000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr17:17713400-17721600	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:17713400-17722800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr17:17713600-17721600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr17:17714000-17725800	Weak transcription	Aorta	Aorta
13	chr17:17715000-17722800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr17:17715000-17723200	Genic enhancers	Brain Hippocampus Middle	brain
15	chr17:17715400-17724600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr17:17715600-17721800	Strong transcription	NHEK	skin
17	chr17:17715600-17726400	Weak transcription	Fetal Kidney	kidney
18	chr17:17715800-17722200	Strong transcription	Primary T cells from cord blood	blood
19	chr17:17715800-17722600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:17715800-17724200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:17716000-17721600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:17716000-17721600	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr17:17716000-17721600	Strong transcription	Fetal Thymus	thymus
24	chr17:17716000-17721800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:17716000-17721800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr17:17716000-17722000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr17:17716000-17722200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr17:17716000-17722200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:17716000-17722200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr17:17716000-17722600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr17:17716000-17722600	Strong transcription	HUVEC	blood vessel
32	chr17:17716000-17723000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:17716000-17723000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:17716000-17723200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr17:17716000-17724400	Strong transcription	Fetal Stomach	stomach
36	chr17:17716000-17724400	Genic enhancers	Right Ventricle	heart
37	chr17:17716200-17721600	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr17:17716200-17721600	Strong transcription	Lung	lung
39	chr17:17716200-17722400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr17:17716200-17722800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr17:17716200-17723600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr17:17716200-17723800	Genic enhancers	Liver	Liver
43	chr17:17716200-17726000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr17:17716400-17721600	Strong transcription	NHLF	lung
45	chr17:17716400-17722200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr17:17716400-17723400	Strong transcription	Thymus	Thymus
47	chr17:17716400-17724000	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr17:17716600-17723800	Strong transcription	Ovary	ovary
49	chr17:17716800-17721600	Strong transcription	HMEC	breast
50	chr17:17716800-17721800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links