Variant report

Variant	rs3183702
Chromosome Location	chr17:17747289-17747290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17630393..17635386-chr17:17740565..17747416,7	MCF-7	breast:
2	chr17:17594067..17596408-chr17:17745227..17748218,2	MCF-7	breast:

Extended variants
information (count: 166 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10048206	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs1052299	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11078399	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11078400	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11078403	0.82[AMR][1000 genomes]
rs11078406	0.88[ASW][hapmap];0.87[CEU][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes]
rs11078408	0.88[ASW][hapmap];0.81[GIH][hapmap];0.80[LWK][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap]
rs1108646	0.83[EUR][1000 genomes]
rs1108648	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11650649	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs11652144	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11652881	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs11654081	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs11656665	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11656840	0.86[CEU][hapmap]
rs11657074	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11657130	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11657423	0.95[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11658309	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11870660	0.89[CHD][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap]
rs12450799	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12600546	0.87[CEU][hapmap]
rs12936037	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12936927	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12938501	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12941039	0.95[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12941550	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12943500	0.82[JPT][hapmap]
rs12946746	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12952723	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16960744	1.00[CEU][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1889014	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1889018	0.95[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2236513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297508	0.86[CEU][hapmap]
rs2350976	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs2350977	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.80[AMR][1000 genomes]
rs2955358	0.88[MEX][hapmap]
rs2955359	0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs2955377	0.81[MKK][hapmap];0.84[YRI][hapmap]
rs2955378	0.83[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs2955380	0.81[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs2955381	0.84[YRI][hapmap]
rs2955383	0.88[MEX][hapmap]
rs2955384	0.83[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs2955385	0.83[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs35451946	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3744113	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3744115	0.95[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3818717	1.00[JPT][hapmap]
rs4077828	0.87[CEU][hapmap]
rs4244602	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs4257260	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs4299203	0.89[CHD][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap]
rs4341796	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs4368210	0.83[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs4413022	0.86[CEU][hapmap]
rs4459604	0.83[MEX][hapmap]
rs4470201	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs4506969	0.84[YRI][hapmap]
rs4584886	0.83[LWK][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs4924821	0.82[EUR][1000 genomes]
rs4924822	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4924823	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4924832	0.88[MEX][hapmap]
rs4925114	0.86[CEU][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs4925115	0.91[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs4925116	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4925117	0.85[ASN][1000 genomes]
rs4925119	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4925120	1.00[CEU][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4925123	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs4925125	0.88[ASW][hapmap];0.82[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4925126	0.88[ASW][hapmap];0.87[CEU][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes]
rs4925129	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs4925130	0.87[CEU][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs5002487	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs58638639	0.83[EUR][1000 genomes]
rs6502618	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6502619	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs6502622	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs6502624	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs6502625	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs6502627	0.87[CEU][hapmap]
rs6502629	0.82[JPT][hapmap]
rs6502632	0.88[MEX][hapmap]
rs7207395	0.82[JPT][hapmap]
rs7207821	0.84[YRI][hapmap]
rs7212167	0.88[MEX][hapmap]
rs7213225	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs7214002	0.86[CEU][hapmap];0.88[YRI][hapmap]
rs7219320	0.89[CHD][hapmap];0.88[MEX][hapmap]
rs7222480	0.86[CEU][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap]
rs7224815	0.82[JPT][hapmap]
rs7359509	0.95[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7406982	0.81[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs7501812	0.95[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7503334	0.86[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs7503747	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8065416	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs8065563	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs8066560	0.95[CEU][hapmap];0.94[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8066982	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs8067439	0.81[TSI][hapmap]
rs8068175	0.82[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap]
rs8070128	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs8070748	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs8073001	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs8078105	0.85[CEU][hapmap];0.96[MEX][hapmap]
rs8078138	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs8078583	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs8078756	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8079321	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8080061	0.95[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8080823	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs950966	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs9890341	0.87[CEU][hapmap]
rs9891957	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9893690	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9894257	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9895335	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9895750	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9896837	0.81[LWK][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap]
rs9899634	0.95[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9902941	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9906673	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9907246	0.95[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9907287	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9908017	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9908299	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9911281	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9912895	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs9913277	0.83[MEX][hapmap]
rs9915248	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9915776	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
16	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
17	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
18	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
19	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
20	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
21	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
22	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
23	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
25	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
26	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
27	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
28	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
29	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
30	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
31	nsv907768	chr17:17709136-17747289	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3183702	TOM1L2	cis	cerebellum	SCAN
rs3183702	TOM1L2	cis	parietal	SCAN
rs3183702	SREBF1	cis	Whole Blood	GTEx

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17743000-17753000	Weak transcription	Fetal Kidney	kidney
2	chr17:17743200-17748400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr17:17743400-17747800	Enhancers	Fetal Heart	heart
4	chr17:17744000-17748000	Weak transcription	Brain Germinal Matrix	brain
5	chr17:17744000-17748600	Enhancers	Brain Cingulate Gyrus	brain
6	chr17:17744000-17749200	Weak transcription	Fetal Brain Female	brain
7	chr17:17744000-17749800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:17744000-17749800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:17744000-17749800	Weak transcription	Ovary	ovary
10	chr17:17744000-17750800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:17744200-17749000	Enhancers	Right Ventricle	heart
12	chr17:17744200-17749600	Weak transcription	Thymus	Thymus
13	chr17:17744400-17748400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr17:17744400-17749800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:17744400-17750400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:17744400-17751800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr17:17744400-17752400	Weak transcription	Primary B cells from cord blood	blood
18	chr17:17744400-17756200	Weak transcription	Aorta	Aorta
19	chr17:17744400-17771400	Weak transcription	Fetal Brain Male	brain
20	chr17:17744600-17749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:17744600-17749200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr17:17744600-17749400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr17:17744600-17749800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:17744600-17749800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:17744600-17750200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr17:17744600-17750400	Weak transcription	Primary T cells from cord blood	blood
27	chr17:17744600-17750600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr17:17744600-17752400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr17:17744600-17752600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr17:17744800-17747400	Enhancers	NHEK	skin
31	chr17:17744800-17747800	Weak transcription	Gastric	stomach
32	chr17:17744800-17748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr17:17744800-17749000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr17:17744800-17749200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr17:17744800-17749400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr17:17744800-17749600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr17:17744800-17749800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr17:17744800-17750000	Weak transcription	Colon Smooth Muscle	Colon
39	chr17:17744800-17751400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr17:17744800-17751800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr17:17744800-17753000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr17:17744800-17753000	Weak transcription	NH-A	brain
43	chr17:17745000-17747600	Weak transcription	Fetal Intestine Small	intestine
44	chr17:17745000-17749400	Weak transcription	Osteobl	bone
45	chr17:17745000-17750000	Weak transcription	Colonic Mucosa	Colon
46	chr17:17745000-17752000	Weak transcription	HSMM	muscle
47	chr17:17745000-17752600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr17:17745200-17747400	Weak transcription	Fetal Stomach	stomach
49	chr17:17745200-17748600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr17:17745200-17748800	Weak transcription	Fetal Intestine Large	intestine

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