Variant report

Variant	rs12936927
Chromosome Location	chr17:17726965-17726966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:104)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:104 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr17:17726752-17727551	K562	blood:	n/a	chr17:17727183-17727192
2	EP300	chr17:17726698-17727637	K562	blood:	n/a	chr17:17727626-17727633
3	SP1	chr17:17726662-17727490	H1-hESC	embryonic stem cell:	n/a	chr17:17727032-17727043 chr17:17727267-17727279 chr17:17727077-17727098 chr17:17727268-17727282 chr17:17727269-17727278 chr17:17727267-17727279
4	TBP	chr17:17726760-17727609	K562	blood:	n/a	n/a
5	CREB1	chr17:17726635-17727656	A549	lung:	n/a	n/a
6	POLR2A	chr17:17726491-17727196	MCF-7	breast:	n/a	n/a
7	POLR2A	chr17:17726708-17726987	MCF-7	breast:	n/a	n/a
8	POLR2A	chr17:17726583-17726986	HL-60	blood:	n/a	n/a
9	SP1	chr17:17726536-17727859	A549	lung:	n/a	chr17:17727032-17727043 chr17:17727706-17727720 chr17:17727705-17727717 chr17:17727705-17727717 chr17:17727267-17727279 chr17:17727077-17727098 chr17:17727268-17727282 chr17:17727707-17727716 chr17:17727269-17727278 chr17:17727706-17727715 chr17:17727267-17727279 chr17:17727706-17727716
10	POLR2A	chr17:17726693-17726967	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr17:17726505-17727149	MCF-7	breast:	n/a	n/a
12	POLR2A	chr17:17726322-17727003	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chr17:17726715-17727523	GM15510	blood:	n/a	n/a
14	CEBPD	chr17:17726936-17727424	HepG2	liver:	n/a	n/a
15	POLR2A	chr17:17726695-17727711	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr17:17726686-17727449	GM18951	blood:	n/a	n/a
17	POLR2A	chr17:17726735-17727042	A549	lung:	n/a	n/a
18	POLR2A	chr17:17723997-17728661	K562	blood:	n/a	n/a
19	HEY1	chr17:17726651-17726981	HepG2	liver:	n/a	n/a
20	POLR2A	chr17:17726719-17727415	HepG2	liver:	n/a	n/a
21	POLR2A	chr17:17726507-17728636	HepG2	liver:	n/a	n/a
22	CHD2	chr17:17726826-17727823	Hela-S3	cervix:	n/a	n/a
23	HEY1	chr17:17726720-17726977	K562	blood:	n/a	n/a
24	CEBPB	chr17:17726769-17727560	Hela-S3	cervix:	n/a	n/a
25	MAX	chr17:17726532-17728380	A549	lung:	n/a	n/a
26	ELF1	chr17:17726754-17726982	K562	blood:	n/a	n/a
27	MAZ	chr17:17726703-17727778	K562	blood:	n/a	n/a
28	RXRA	chr17:17726865-17727593	SK-N-SH	brain:	n/a	chr17:17727282-17727298
29	POLR2A	chr17:17726646-17727013	ECC-1	luminal epithelium:	n/a	n/a
30	ETS1	chr17:17726773-17726972	K562	blood:	n/a	n/a
31	RFX5	chr17:17726898-17727455	Hela-S3	cervix:	n/a	chr17:17727079-17727088
32	POLR2A	chr17:17726400-17727574	NB4	blood:	n/a	n/a
33	MAZ	chr17:17726740-17727489	Hela-S3	cervix:	n/a	n/a
34	SIN3AK20	chr17:17726799-17726969	HepG2	liver:	n/a	n/a
35	MAX	chr17:17726766-17727682	Hela-S3	cervix:	n/a	n/a
36	HA-E2F1	chr17:17726572-17726967	MCF-7	breast:	n/a	n/a
37	RXRA	chr17:17726827-17727728	SK-N-SH	brain:	n/a	chr17:17727705-17727725 chr17:17727282-17727298
38	SREBP1	chr17:17726236-17727727	GM12878	blood:	n/a	chr17:17727063-17727074
39	IRF1	chr17:17726754-17727641	K562	blood:	n/a	chr17:17727078-17727087 chr17:17727265-17727279
40	MYC	chr17:17726848-17727687	K562	blood:	n/a	n/a
41	POLR2A	chr17:17725297-17728677	K562	blood:	n/a	n/a
42	POLR2A	chr17:17723703-17728433	PBDE	blood:	n/a	n/a
43	PBX3	chr17:17726815-17726973	GM12878	blood:	n/a	n/a
44	TFAP2C	chr17:17726508-17728084	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr17:17726755-17726974	GM12878	blood:	n/a	n/a
46	POLR2A	chr17:17726679-17728017	GM19193	blood:	n/a	n/a
47	POLR2A	chr17:17726804-17726966	A549	lung:	n/a	n/a
48	HMGN3	chr17:17726752-17727624	K562	blood:	n/a	n/a
49	MAZ	chr17:17726758-17727474	HepG2	liver:	n/a	n/a
50	POLR2A	chr17:17726700-17727112	ProgFib	skin:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:17726965-17727015	Caco-2	colon:	n/a
2	chr17:17726965-17727015	Hepatocyte	liver:	n/a
3	chr17:17726965-17727015	AG10803	skin:	n/a
4	chr17:17726965-17727015	NH-A	brain:	n/a
5	chr17:17726965-17727015	K562	blood:	n/a
6	chr17:17726965-17727015	HIPEpiC	eye:	n/a
7	chr17:17726965-17727015	PrEC	prostate:	n/a
8	chr17:17726965-17727015	HCT-116	colon:	n/a
9	chr17:17726965-17727015	Hela-S3	cervix:	n/a
10	chr17:17726965-17727015	SKMC	muscle:	n/a
11	chr17:17726965-17727015	ProgFib	skin:	n/a
12	chr17:17726965-17727015	A549	lung:	n/a
13	chr17:17726965-17727015	ECC-1	luminal epithelium:	n/a
14	chr17:17726965-17727015	LNCaP	prostate:	n/a
15	chr17:17726965-17727015	HRE	kidney:	n/a
16	chr17:17726965-17727015	CMK	blood:	n/a
17	chr17:17726965-17727015	NT2-D1	testis:	n/a
18	chr17:17726965-17727015	BE2_C	brain:	n/a
19	chr17:17726965-17727015	HMEC	breast:	n/a
20	chr17:17726965-17727015	HCPEpiC	choroid plexus:	n/a
21	chr17:17726965-17727015	PFSK-1	brain:	n/a
22	chr17:17726965-17727015	NHDF-neo	bronchial:	n/a
23	chr17:17726965-17727015	SAEC	small airway:	n/a
24	chr17:17726965-17727015	NB4	blood:	n/a
25	chr17:17726965-17727015	HAEpiC	amniotic membrane:	n/a
26	chr17:17726965-17727015	HRCEpiC	kidney:	n/a
27	chr17:17726965-17727015	Jurkat	blood:	n/a
28	chr17:17726965-17727015	AG04450	lung:	fetal
29	chr17:17726965-17727015	U87	brain:	n/a
30	chr17:17726965-17727015	SK-N-MC	brain:	n/a
31	chr17:17726965-17727015	HCM	heart:	n/a
32	chr17:17726965-17727015	HUVEC	blood vessel:	n/a
33	chr17:17726965-17727015	MCF10A-Er-Src	breast:	n/a
34	chr17:17726965-17727015	HEEpiC	esophagus:	n/a
35	chr17:17726965-17727015	SK-N-SH_RA	brain:	n/a
36	chr17:17726965-17727015	GM12891	blood:	n/a
37	chr17:17726965-17727015	ovcar-3	ovarian:	n/a
38	chr17:17726965-17727015	MCF-7	breast:	n/a
39	chr17:17726965-17727015	BJ	skin:	n/a
40	chr17:17726965-17727015	GM12878	blood:	n/a
41	chr17:17726965-17727015	GM19239	blood:	n/a
42	chr17:17726965-17727015	AG04449	skin:	fetal
43	chr17:17726965-17727015	IMR90	lung:	fetal
44	chr17:17726965-17727015	HEK293	kidney:	embryo
45	chr17:17726965-17727015	HPAEpiC	pulmonary alveolar:	n/a
46	chr17:17726965-17727015	RPTEC	kidney:	n/a
47	chr17:17726965-17727015	HL-60	blood:	n/a
48	chr17:17726965-17727015	AG09309	skin:	n/a
49	chr17:17726965-17727015	PANC-1	pancreas:	n/a
50	chr17:17726965-17727015	GM12892	blood:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17726921..17727538-chr5:149737180..149737762,2	Hela-S3	cervix:
2	chr17:17584408..17586554-chr17:17725797..17727625,2	K562	blood:
3	chr17:17583643..17586896-chr17:17724231..17729521,8	MCF-7	breast:
4	chr17:17724980..17727565-chr17:17764878..17766852,2	MCF-7	breast:
5	chr17:17584806..17586554-chr17:17724863..17727625,2	K562	blood:
6	chr17:17726446..17727206-chr17:17739539..17740685,3	Hela-S3	cervix:

No data

Variant related genes	Relation type
SREBF1	TF binding region
SREBF1	CpG island
ENSG00000108557	Chromatin interaction
ENSG00000175662	Chromatin interaction
ENSG00000072310	Chromatin interaction
ENSG00000070814	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1052299	0.83[EUR][1000 genomes]
rs11078399	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1108648	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11652144	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11656665	0.82[AMR][1000 genomes]
rs11657074	0.81[AMR][1000 genomes]
rs11657130	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11657423	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11658309	0.80[AMR][1000 genomes]
rs12936037	0.81[AMR][1000 genomes]
rs12938501	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12946746	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12952723	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12953299	0.88[ASN][1000 genomes]
rs16960744	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1889018	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2236513	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3183702	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35451946	0.81[AMR][1000 genomes]
rs3744113	0.83[EUR][1000 genomes]
rs3744115	0.83[EUR][1000 genomes]
rs4924822	0.84[EUR][1000 genomes]
rs4925116	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4925119	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4925120	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7359509	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7501812	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7503747	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8066560	0.85[EUR][1000 genomes]
rs8078756	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8080061	0.81[AMR][1000 genomes]
rs9891957	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9893690	0.84[EUR][1000 genomes]
rs9895750	0.81[AMR][1000 genomes]
rs9899634	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9902941	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9906673	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9907246	0.81[AMR][1000 genomes]
rs9908017	0.81[AMR][1000 genomes]
rs9908299	0.81[AMR][1000 genomes]
rs9915248	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9915776	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
16	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
17	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
18	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
21	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
22	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
25	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
27	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
28	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
29	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
30	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
31	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
32	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
33	nsv907767	chr17:17709136-17733760	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
34	nsv907768	chr17:17709136-17747289	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12936927	SREBF1	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17718200-17728600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr17:17723200-17730000	Enhancers	Stomach Mucosa	stomach
3	chr17:17723600-17727600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr17:17723800-17728800	Enhancers	Gastric	stomach
5	chr17:17724400-17727000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:17725000-17729600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:17725400-17727000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr17:17725400-17727000	Flanking Active TSS	HMEC	breast
9	chr17:17725600-17727200	Active TSS	Brain Substantia Nigra	brain
10	chr17:17725600-17727200	Enhancers	HUVEC	blood vessel
11	chr17:17725600-17728600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:17725800-17727000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr17:17725800-17727000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr17:17725800-17727000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr17:17726000-17727000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:17726000-17727000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:17726000-17728800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr17:17726200-17727000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr17:17726200-17727000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:17726200-17727200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:17726200-17727400	Active TSS	Brain Cingulate Gyrus	brain
22	chr17:17726400-17727000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:17726400-17727000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr17:17726400-17727000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:17726400-17727000	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr17:17726400-17727000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr17:17726400-17727000	Flanking Active TSS	Placenta	Placenta
28	chr17:17726400-17727400	Active TSS	Fetal Kidney	kidney
29	chr17:17726400-17728600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr17:17726600-17727000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:17726600-17727000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
32	chr17:17726600-17727200	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr17:17726600-17727200	Active TSS	Brain Angular Gyrus	brain
34	chr17:17726600-17727200	Active TSS	Brain Hippocampus Middle	brain
35	chr17:17726600-17727200	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr17:17726600-17727200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr17:17726600-17727200	Active TSS	Esophagus	oesophagus
38	chr17:17726600-17727200	Active TSS	Fetal Heart	heart
39	chr17:17726600-17727200	Active TSS	Thymus	Thymus
40	chr17:17726600-17727200	Active TSS	A549	lung
41	chr17:17726600-17727200	Active TSS	HSMM	muscle
42	chr17:17726600-17727200	Active TSS	NHDF-Ad	bronchial
43	chr17:17726600-17727200	Active TSS	NHLF	lung
44	chr17:17726600-17727400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:17726600-17727400	Active TSS	Primary T cells from cord blood	blood
46	chr17:17726600-17727400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:17726600-17727400	Active TSS	Aorta	Aorta
48	chr17:17726600-17727400	Active TSS	Colon Smooth Muscle	Colon
49	chr17:17726600-17727400	Active TSS	Fetal Brain Female	brain
50	chr17:17726600-17727400	Active TSS	Ovary	ovary

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