Variant report

Variant rs12953299
Chromosome Location chr17:17726648-17726649
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:17718200-17728600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
2 chr17:17722800-17726800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
3 chr17:17723200-17730000 Enhancers Stomach Mucosa stomach
4 chr17:17723600-17727600 Active TSS Pancreatic Islets Pancreatic Islet
5 chr17:17723800-17726800 Flanking Active TSS Liver Liver
6 chr17:17723800-17728800 Enhancers Gastric stomach
7 chr17:17724000-17726800 Transcr. at gene 5' and 3' NHEK skin
8 chr17:17724200-17726800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr17:17724200-17726800 Flanking Active TSS Stomach Smooth Muscle stomach
10 chr17:17724200-17726800 Transcr. at gene 5' and 3' K562 blood
11 chr17:17724400-17726800 Flanking Active TSS Cortex derived primary cultured neurospheres brain
12 chr17:17724400-17726800 Flanking Active TSS Adipose Nuclei Adipose
13 chr17:17724400-17726800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
14 chr17:17724400-17727000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr17:17724600-17726800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
16 chr17:17724600-17726800 Flanking Active TSS Duodenum Mucosa Duodenum
17 chr17:17724800-17726800 Flanking Active TSS Colonic Mucosa Colon
18 chr17:17724800-17726800 Flanking Active TSS Right Atrium heart
19 chr17:17724800-17726800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
20 chr17:17725000-17729600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
21 chr17:17725200-17726800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
22 chr17:17725200-17726800 Flanking Active TSS Rectal Smooth Muscle rectum
23 chr17:17725200-17726800 Enhancers Spleen Spleen
24 chr17:17725400-17726800 Flanking Active TSS Fetal Thymus thymus
25 chr17:17725400-17726800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
26 chr17:17725400-17726800 Transcr. at gene 5' and 3' HepG2 liver
27 chr17:17725400-17727000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr17:17725400-17727000 Flanking Active TSS HMEC breast
29 chr17:17725600-17726800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
30 chr17:17725600-17726800 Flanking Active TSS Duodenum Smooth Muscle Duodenum
31 chr17:17725600-17726800 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
32 chr17:17725600-17727200 Active TSS Brain Substantia Nigra brain
33 chr17:17725600-17727200 Enhancers HUVEC blood vessel
34 chr17:17725600-17728600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
35 chr17:17725800-17726800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr17:17725800-17726800 Flanking Active TSS Primary T helper cells fromperipheralblood blood
37 chr17:17725800-17726800 Flanking Active TSS Fetal Intestine Large intestine
38 chr17:17725800-17726800 Flanking Active TSS Fetal Muscle Leg muscle
39 chr17:17725800-17726800 Flanking Active TSS Left Ventricle heart
40 chr17:17725800-17726800 Flanking Active TSS Right Ventricle heart
41 chr17:17725800-17726800 Flanking Active TSS Sigmoid Colon Sigmoid Colon
42 chr17:17725800-17726800 Flanking Active TSS Small Intestine intestine
43 chr17:17725800-17727000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr17:17725800-17727000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
45 chr17:17725800-17727000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr17:17726000-17726800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
47 chr17:17726000-17726800 Flanking Active TSS Primary hematopoietic stem cells blood
48 chr17:17726000-17726800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
49 chr17:17726000-17726800 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
50 chr17:17726000-17726800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin

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