Variant report

Variant	rs4925126
Chromosome Location	chr17:17798633-17798634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17797301..17798847-chr17:17935255..17937425,2	MCF-7	breast:
2	chr17:17790122..17792930-chr17:17795392..17799194,3	K562	blood:
3	chr17:17794549..17797044-chr17:17797570..17800049,2	MCF-7	breast:
4	chr17:17791430..17793129-chr17:17797694..17800158,2	K562	blood:
5	chr17:17796724..17798654-chr17:17812800..17814687,2	K562	blood:

Extended variants
information (count: 182 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10048206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1052299	0.83[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.83[AMR][1000 genomes]
rs11078400	0.88[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11078403	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11078404	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078405	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11078406	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078407	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078408	1.00[ASW][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs1108648	0.80[CEU][hapmap];0.82[AMR][1000 genomes]
rs11650649	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11650890	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11652881	0.80[MEX][hapmap]
rs11656840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11657074	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11657423	0.85[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs11657773	0.82[EUR][1000 genomes]
rs11657845	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11658309	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11869536	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11870660	0.90[GIH][hapmap];0.92[MEX][hapmap]
rs11871899	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12452219	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12452254	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12600546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12603148	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12936037	0.85[EUR][1000 genomes]
rs12938501	0.83[AMR][1000 genomes]
rs12941039	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs12943500	0.91[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs12953299	0.80[CEU][hapmap]
rs16960744	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1889018	0.87[GIH][hapmap];0.88[MEX][hapmap]
rs2236513	0.82[CEU][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs2350976	0.80[MEX][hapmap]
rs2350977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28428991	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2955354	0.89[YRI][hapmap]
rs2955355	0.92[MEX][hapmap]
rs2955356	0.92[MEX][hapmap]
rs2955358	0.92[MEX][hapmap]
rs2955359	0.88[ASW][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs2955370	0.82[JPT][hapmap];0.89[YRI][hapmap]
rs2955371	0.91[CEU][hapmap]
rs2955372	0.85[LWK][hapmap];0.92[MEX][hapmap]
rs2955377	0.88[ASW][hapmap];0.92[YRI][hapmap]
rs2955378	0.88[ASW][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.92[YRI][hapmap]
rs2955380	0.88[ASW][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs2955381	0.89[YRI][hapmap]
rs2955382	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs2955383	0.92[MEX][hapmap]
rs2955384	0.88[ASW][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.92[YRI][hapmap]
rs2955385	0.88[ASW][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.92[YRI][hapmap]
rs3183702	0.88[ASW][hapmap];0.87[CEU][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes]
rs35451946	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3744113	0.82[AMR][1000 genomes]
rs3744115	0.93[GIH][hapmap];0.96[MEX][hapmap];0.83[AMR][1000 genomes]
rs4077198	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4077828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4244602	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4257260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4299203	0.90[GIH][hapmap];0.92[MEX][hapmap]
rs4321247	0.86[EUR][1000 genomes]
rs4341796	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4343339	0.93[EUR][1000 genomes]
rs4368210	0.88[ASW][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.92[YRI][hapmap]
rs4413022	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4414547	0.93[EUR][1000 genomes]
rs4426402	0.94[ASW][hapmap];0.81[YRI][hapmap]
rs4459604	0.87[MEX][hapmap]
rs4470201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4471742	0.80[EUR][1000 genomes]
rs4506969	0.92[YRI][hapmap]
rs4534911	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4553680	0.92[EUR][1000 genomes]
rs4584886	0.91[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.92[YRI][hapmap]
rs4616340	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4924822	0.88[ASW][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes]
rs4924823	0.88[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4924832	0.92[MEX][hapmap]
rs4925119	0.90[GIH][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes]
rs4925120	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs4925123	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4925125	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4925129	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4925130	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5002487	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62064156	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62064158	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6502618	0.82[AMR][1000 genomes]
rs6502619	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6502622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6502624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6502625	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6502626	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6502627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6502629	0.91[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs6502632	0.92[MEX][hapmap]
rs66531105	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67253360	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7207043	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7207395	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7207821	0.92[YRI][hapmap]
rs7208190	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7211714	0.87[ASW][hapmap]
rs7212167	0.92[MEX][hapmap]
rs7212447	0.87[ASW][hapmap]
rs7213225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7214002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7214536	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7219320	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs7222480	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7224815	0.91[CEU][hapmap]
rs7359509	0.87[GIH][hapmap];0.88[MEX][hapmap]
rs7406982	0.88[ASW][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs7501812	0.90[GIH][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes]
rs7503334	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8065416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8065497	0.81[EUR][1000 genomes]
rs8065563	1.00[CEU][hapmap];0.96[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8065970	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8066560	0.85[GIH][hapmap];0.83[MEX][hapmap]
rs8066982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8068175	0.90[GIH][hapmap];0.88[MEX][hapmap]
rs8068820	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8070128	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8070722	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8070748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8073001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8075965	0.90[EUR][1000 genomes]
rs8076747	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8077530	0.91[EUR][1000 genomes]
rs8078105	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8078138	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8078583	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8078756	0.81[AMR][1000 genomes]
rs8079321	0.88[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8080061	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8080823	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs950966	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9635697	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9635698	0.92[EUR][1000 genomes]
rs9890341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9891957	0.81[AMR][1000 genomes]
rs9893690	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9895750	0.85[EUR][1000 genomes]
rs9896837	0.88[ASW][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.92[YRI][hapmap]
rs9899634	0.85[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs9902941	0.85[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes]
rs9904163	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9905284	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9906673	0.82[AMR][1000 genomes]
rs9907246	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9907287	0.88[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9908017	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9908299	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9908832	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9911281	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9912895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9913277	0.87[MEX][hapmap]
rs9913724	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9914127	0.80[EUR][1000 genomes]
rs9915248	0.83[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs9915776	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
8	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
11	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
12	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
13	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
14	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
16	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
17	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
18	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4925126	TOM1L2	cis	parietal	SCAN
rs4925126	AC122129.1	cis	Muscle Skeletal	GTEx
rs4925126	SREBF1	cis	multi-tissue	Pritchard
rs4925126	TOM1L2	cis	cerebellum	SCAN
rs4925126	SREBF1	cis	Whole Blood	GTEx

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17764200-17803000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr17:17764400-17799600	Weak transcription	A549	lung
3	chr17:17767600-17807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:17769200-17804600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:17776400-17803200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:17781000-17802600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:17781600-17810600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr17:17782200-17801600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:17782200-17803800	Weak transcription	Stomach Mucosa	stomach
10	chr17:17782200-17817000	Weak transcription	Fetal Kidney	kidney
11	chr17:17783000-17802200	Weak transcription	Dnd41	blood
12	chr17:17783000-17808200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr17:17788800-17800000	Weak transcription	Psoas Muscle	Psoas
14	chr17:17788800-17800200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:17789800-17802400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr17:17790000-17801400	Weak transcription	Small Intestine	intestine
17	chr17:17790200-17800200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr17:17790200-17803800	Strong transcription	Fetal Intestine Small	intestine
19	chr17:17790400-17802200	Strong transcription	NHEK	skin
20	chr17:17790600-17802800	Weak transcription	Right Atrium	heart
21	chr17:17791000-17803000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr17:17792200-17800400	Strong transcription	Aorta	Aorta
23	chr17:17792200-17800400	Strong transcription	Gastric	stomach
24	chr17:17792200-17801800	Weak transcription	NHDF-Ad	bronchial
25	chr17:17792400-17800400	Strong transcription	Brain Cingulate Gyrus	brain
26	chr17:17792600-17802000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr17:17792600-17802400	Strong transcription	Fetal Muscle Leg	muscle
28	chr17:17792600-17802800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr17:17792600-17803600	Weak transcription	HUVEC	blood vessel
30	chr17:17792600-17803800	Strong transcription	Fetal Stomach	stomach
31	chr17:17792800-17799400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr17:17792800-17802600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr17:17793000-17799400	Strong transcription	Brain Substantia Nigra	brain
34	chr17:17793000-17803800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr17:17793000-17817200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr17:17793200-17800800	Strong transcription	HSMMtube	muscle
37	chr17:17793800-17802600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr17:17793800-17802600	Strong transcription	Fetal Brain Female	brain
39	chr17:17794200-17800200	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr17:17794200-17801000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:17794200-17802800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr17:17794600-17803200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr17:17794600-17803200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr17:17794800-17800400	Strong transcription	Esophagus	oesophagus
45	chr17:17794800-17802200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr17:17794800-17802200	Strong transcription	Fetal Intestine Large	intestine
47	chr17:17794800-17802600	Strong transcription	Placenta	Placenta
48	chr17:17794800-17803200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr17:17795000-17799600	Strong transcription	Left Ventricle	heart
50	chr17:17795000-17801200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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