Variant report

Variant	rs2955380
Chromosome Location	chr17:17944349-17944350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17942903..17946429-chr17:17996253..17997904,3	K562	blood:
2	chr17:17943291..17945183-chr17:17948425..17950238,2	MCF-7	breast:
3	chr17:17943464..17946446-chr17:17950718..17954584,5	K562	blood:
4	chr17:17943901..17945581-chr17:17991269..17993696,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108591	Chromatin interaction

Extended variants
information (count: 181 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10048206	0.92[JPT][hapmap];0.92[MEX][hapmap]
rs1008135	0.82[EUR][1000 genomes]
rs1052299	0.88[MEX][hapmap]
rs1101727	0.83[EUR][1000 genomes]
rs11078400	0.89[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap]
rs11078406	0.88[ASW][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap]
rs11078408	0.88[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11078409	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11078410	0.81[EUR][1000 genomes]
rs11650021	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11650649	0.84[MEX][hapmap]
rs11658257	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11869491	0.86[EUR][1000 genomes]
rs11870660	0.90[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs11871231	0.87[EUR][1000 genomes]
rs12150369	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12600546	0.92[JPT][hapmap]
rs12603148	0.81[AFR][1000 genomes]
rs12939020	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12940282	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12941039	0.84[MEX][hapmap]
rs12948749	0.83[EUR][1000 genomes]
rs16960744	0.92[MEX][hapmap]
rs2056842	0.82[EUR][1000 genomes]
rs2236513	0.88[YRI][hapmap]
rs2350977	0.92[MEX][hapmap]
rs28537385	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555361	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2955350	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955352	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2955353	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955355	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2955356	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2955357	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2955358	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2955359	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955365	0.81[CEU][hapmap];0.85[GIH][hapmap];0.83[EUR][1000 genomes]
rs2955366	0.83[EUR][1000 genomes]
rs2955368	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2955369	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2955370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955371	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs2955372	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955373	0.83[AMR][1000 genomes]
rs2955377	1.00[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2955378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955383	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2955384	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2974998	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2974999	0.95[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3183702	0.81[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs3744115	0.88[MEX][hapmap]
rs3935505	0.97[ASN][1000 genomes]
rs3935506	0.97[ASN][1000 genomes]
rs4072738	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs4072739	0.95[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs4257260	0.92[JPT][hapmap];0.92[MEX][hapmap]
rs4299203	0.90[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs4341796	0.84[MEX][hapmap]
rs4365346	0.85[EUR][1000 genomes]
rs4365348	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4368210	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4410135	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4426402	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[GIH][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4459604	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4470201	0.92[MEX][hapmap]
rs4471742	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4506967	0.81[EUR][1000 genomes]
rs4506969	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4561528	0.83[EUR][1000 genomes]
rs4584886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635395	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4643387	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4924822	0.92[MEX][hapmap];0.85[MKK][hapmap];0.85[YRI][hapmap]
rs4924823	0.89[LWK][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap]
rs4924832	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4925120	0.92[MEX][hapmap]
rs4925123	0.84[MEX][hapmap]
rs4925125	0.88[ASW][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs4925126	0.88[ASW][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs4925129	0.84[MEX][hapmap]
rs4925130	0.88[MEX][hapmap]
rs4925133	0.83[MEX][hapmap];0.91[TSI][hapmap]
rs4925135	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4925136	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5002487	0.84[MEX][hapmap]
rs59518074	0.86[EUR][1000 genomes]
rs62072048	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62072050	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62073573	0.86[EUR][1000 genomes]
rs6502622	0.92[MEX][hapmap]
rs6502624	0.92[MEX][hapmap]
rs6502627	0.92[JPT][hapmap]
rs6502631	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6502632	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6502633	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502634	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6502636	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6502637	0.85[EUR][1000 genomes]
rs6826	0.83[EUR][1000 genomes]
rs712267	0.83[EUR][1000 genomes]
rs712268	0.82[EUR][1000 genomes]
rs7207461	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209003	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7210400	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7211714	0.89[ASW][hapmap];0.95[CEU][hapmap];0.91[GIH][hapmap];0.85[EUR][1000 genomes]
rs7212167	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7212447	0.89[ASW][hapmap];0.95[CEU][hapmap];0.91[GIH][hapmap];0.81[YRI][hapmap];0.85[EUR][1000 genomes]
rs7213225	0.92[JPT][hapmap];0.92[MEX][hapmap]
rs7214002	0.92[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs7215524	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721669	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs7219320	0.82[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs7219324	0.95[CEU][hapmap];0.88[GIH][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs7222480	0.84[MEX][hapmap]
rs7223696	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7224047	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7406744	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7406982	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs741782	0.83[EUR][1000 genomes]
rs7501812	0.80[MEX][hapmap]
rs7503334	0.84[MEX][hapmap]
rs7503738	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065416	0.92[JPT][hapmap];0.92[MEX][hapmap]
rs8065563	0.84[MEX][hapmap]
rs8066764	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8066982	0.92[JPT][hapmap];0.92[MEX][hapmap]
rs8068175	0.90[CEU][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs8069811	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8070128	0.84[MEX][hapmap]
rs8070731	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8070748	0.92[JPT][hapmap];0.92[MEX][hapmap]
rs8071238	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8073001	0.92[MEX][hapmap]
rs8075189	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8078105	0.92[MEX][hapmap]
rs8078138	0.84[MEX][hapmap]
rs8079321	0.89[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap]
rs8080061	0.92[MEX][hapmap]
rs8080334	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8080602	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080823	0.84[MEX][hapmap]
rs8082590	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs854763	0.95[CEU][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes]
rs854767	0.95[CEU][hapmap];0.88[GIH][hapmap];0.83[EUR][1000 genomes]
rs854768	0.83[EUR][1000 genomes]
rs854769	0.95[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs854770	0.83[EUR][1000 genomes]
rs854789	0.82[EUR][1000 genomes]
rs854790	0.95[CEU][hapmap];0.83[GIH][hapmap];0.82[EUR][1000 genomes]
rs854791	0.95[CEU][hapmap];0.85[GIH][hapmap];0.83[EUR][1000 genomes]
rs854808	0.83[EUR][1000 genomes]
rs854809	0.95[CEU][hapmap];0.88[GIH][hapmap];0.83[EUR][1000 genomes]
rs854814	0.95[CEU][hapmap];0.88[GIH][hapmap];0.83[EUR][1000 genomes]
rs854817	0.95[CEU][hapmap];0.85[GIH][hapmap];0.83[EUR][1000 genomes]
rs854818	0.82[EUR][1000 genomes]
rs9303144	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs950966	0.84[MEX][hapmap]
rs9894138	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9896837	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897761	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9899355	0.95[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs9907246	0.84[MEX][hapmap]
rs9907287	0.89[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap]
rs9908832	0.81[AFR][1000 genomes]
rs9911850	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9912096	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9912895	0.92[MEX][hapmap]
rs9913277	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9914127	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9915248	0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv510701	chr17:17850474-17955485	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2955380	TOM1L2	cis	parietal	SCAN
rs2955380	C17orf39	cis	cerebellum	SCAN
rs2955380	TOM1L2	cis	cerebellum	SCAN
rs2955380	SREBF1	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17941600-17944400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:17942000-17944400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr17:17943000-17944400	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr17:17943200-17944400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr17:17943200-17944800	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr17:17943400-17944400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:17943400-17944400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:17943400-17944400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr17:17943400-17944400	Flanking Active TSS	Brain Anterior Caudate	brain
10	chr17:17943400-17944400	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr17:17943400-17944400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr17:17943400-17944400	Flanking Active TSS	Rectal Smooth Muscle	rectum
13	chr17:17943400-17944400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr17:17943400-17944400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr17:17943400-17944600	Flanking Active TSS	Fetal Brain Female	brain
16	chr17:17943400-17945400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:17943400-17945400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:17943600-17944400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:17943600-17944400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:17943600-17944400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr17:17943600-17944400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr17:17943600-17944400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr17:17943600-17944400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr17:17943600-17944400	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr17:17943600-17944400	Flanking Active TSS	Esophagus	oesophagus
26	chr17:17943600-17944400	Enhancers	Stomach Mucosa	stomach
27	chr17:17943600-17944400	Flanking Active TSS	A549	lung
28	chr17:17943600-17944400	Flanking Active TSS	Hela-S3	cervix
29	chr17:17943600-17944400	Flanking Active TSS	Osteobl	bone
30	chr17:17943600-17945200	Flanking Active TSS	Dnd41	blood
31	chr17:17943600-17945200	Flanking Active TSS	NHEK	skin
32	chr17:17943600-17946200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr17:17943800-17944400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr17:17943800-17944400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr17:17943800-17944400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr17:17943800-17944400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr17:17943800-17944400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr17:17943800-17944400	Enhancers	Fetal Kidney	kidney
39	chr17:17943800-17944400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr17:17943800-17944600	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr17:17943800-17944600	Enhancers	Primary B cells from peripheral blood	blood
42	chr17:17943800-17944600	Flanking Active TSS	HepG2	liver
43	chr17:17943800-17944800	Enhancers	Small Intestine	intestine
44	chr17:17943800-17945000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr17:17943800-17945400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr17:17943800-17945400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr17:17943800-17945400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr17:17943800-17945400	Enhancers	Placenta	Placenta
49	chr17:17943800-17945400	Enhancers	Spleen	Spleen
50	chr17:17943800-17946600	Enhancers	Fetal Brain Male	brain

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