Variant report

Variant	rs4925123
Chromosome Location	chr17:17784374-17784375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17783400..17786089-chr17:17787251..17789927,3	MCF-7	breast:
2	chr17:17783462..17784381-chr17:17822416..17823137,2	MCF-7	breast:
3	chr17:17775228..17778055-chr17:17784190..17785694,2	MCF-7	breast:
4	chr17:17773860..17776203-chr17:17781789..17784456,3	K562	blood:

Variant related genes	Relation type
ENSG00000175662	Chromatin interaction

Extended variants
information (count: 178 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10048206	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs1052299	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11078400	0.91[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11078403	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11078404	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11078405	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078406	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11078407	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11078408	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs1108648	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11650649	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650890	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652144	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11652881	0.82[JPT][hapmap];0.88[MEX][hapmap]
rs11656665	0.82[JPT][hapmap]
rs11656840	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11657074	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657130	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11657423	1.00[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs11657773	0.82[EUR][1000 genomes]
rs11657845	0.82[EUR][1000 genomes]
rs11658309	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11869536	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11870660	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs11871899	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12452219	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12452254	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12600546	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12603148	0.90[EUR][1000 genomes]
rs12936037	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12941039	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943500	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12946746	0.84[AMR][1000 genomes]
rs12953299	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs16960744	0.83[CEU][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes]
rs1889014	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1889018	0.80[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2236513	0.82[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs2350976	0.82[JPT][hapmap];0.88[MEX][hapmap]
rs2350977	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28428991	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2955355	0.84[MEX][hapmap]
rs2955356	0.84[MEX][hapmap]
rs2955358	0.84[MEX][hapmap]
rs2955359	0.84[MEX][hapmap]
rs2955371	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2955372	0.84[MEX][hapmap]
rs2955378	0.84[MEX][hapmap]
rs2955380	0.84[MEX][hapmap]
rs2955382	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs2955383	0.84[MEX][hapmap]
rs2955384	0.84[MEX][hapmap]
rs2955385	0.84[MEX][hapmap]
rs3183702	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs35451946	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3744113	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3744115	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818717	0.82[JPT][hapmap]
rs4077198	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4077828	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4244602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4257260	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs4299203	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs4321247	0.87[EUR][1000 genomes]
rs4341796	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4343339	0.90[EUR][1000 genomes]
rs4368210	0.84[MEX][hapmap]
rs4413022	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4414547	0.90[EUR][1000 genomes]
rs4459604	0.88[MEX][hapmap]
rs4470201	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4534911	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4553680	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4584886	0.83[MEX][hapmap]
rs4616340	0.90[EUR][1000 genomes]
rs4924822	0.87[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4924823	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4924832	0.84[MEX][hapmap]
rs4925119	0.87[GIH][hapmap];0.87[MEX][hapmap]
rs4925120	0.83[CEU][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs4925125	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4925126	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4925129	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4925130	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5002487	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62064156	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62064158	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6502618	0.88[ASN][1000 genomes]
rs6502619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502622	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6502624	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6502625	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6502626	0.91[EUR][1000 genomes]
rs6502627	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6502629	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.91[ASN][1000 genomes]
rs6502632	0.84[MEX][hapmap]
rs66531105	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67253360	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7207043	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7207395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7208190	0.88[EUR][1000 genomes]
rs7212167	0.84[MEX][hapmap]
rs7213225	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7214002	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7214536	0.91[EUR][1000 genomes]
rs7219320	0.84[MEX][hapmap]
rs7222480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7224815	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7359509	0.81[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs7406982	0.84[MEX][hapmap]
rs7501812	1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7503334	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7503747	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8065416	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs8065497	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065563	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065970	0.90[EUR][1000 genomes]
rs8066560	0.82[GIH][hapmap]
rs8066982	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs8068175	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs8068820	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8070128	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8070624	0.87[ASN][1000 genomes]
rs8070722	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8070748	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs8073001	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8075965	0.87[EUR][1000 genomes]
rs8076747	0.88[EUR][1000 genomes]
rs8077338	0.91[ASN][1000 genomes]
rs8077530	0.88[EUR][1000 genomes]
rs8078105	1.00[CEU][hapmap];0.92[MEX][hapmap];0.88[EUR][1000 genomes]
rs8078138	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8078583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8078756	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8079321	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8080061	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8080823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs950966	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9635697	0.90[EUR][1000 genomes]
rs9635698	0.89[EUR][1000 genomes]
rs9890341	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9891957	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9895335	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9895750	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899634	1.00[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes]
rs9902941	0.82[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap]
rs9904163	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9905284	0.90[EUR][1000 genomes]
rs9906673	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907246	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9907287	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9908017	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9908299	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908832	0.89[EUR][1000 genomes]
rs9911281	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9912895	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9913277	0.88[MEX][hapmap]
rs9913724	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9915248	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9915776	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
8	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
11	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
12	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
13	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
14	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
16	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
17	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
18	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4925123	TOM1L2	cis	parietal	SCAN
rs4925123	SREBF1	cis	multi-tissue	Pritchard
rs4925123	SREBF1	cis	Whole Blood	GTEx
rs4925123	TOM1L2	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17756800-17789600	Weak transcription	Small Intestine	intestine
2	chr17:17764200-17803000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr17:17764400-17799600	Weak transcription	A549	lung
4	chr17:17767600-17807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:17768400-17792200	Weak transcription	GM12878-XiMat	blood
6	chr17:17769200-17789400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr17:17769200-17804600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:17769400-17792400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr17:17769600-17795200	Strong transcription	Primary T cells from cord blood	blood
10	chr17:17776400-17803200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr17:17778000-17788600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:17778000-17789000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr17:17778000-17789400	Strong transcription	Thymus	Thymus
14	chr17:17778200-17796200	Weak transcription	Hela-S3	cervix
15	chr17:17778400-17784600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:17778400-17786400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:17778600-17788800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:17778600-17793400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr17:17778800-17784400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr17:17778800-17785800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr17:17778800-17786200	Strong transcription	HMEC	breast
22	chr17:17778800-17789000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr17:17779000-17788600	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr17:17779200-17788000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr17:17779600-17784600	Genic enhancers	Brain Hippocampus Middle	brain
26	chr17:17779600-17784600	Genic enhancers	Fetal Thymus	thymus
27	chr17:17779600-17784800	Genic enhancers	Brain Anterior Caudate	brain
28	chr17:17779800-17791400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr17:17780000-17784400	Genic enhancers	Esophagus	oesophagus
30	chr17:17780000-17788600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr17:17780800-17784400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr17:17780800-17788800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr17:17781000-17788400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr17:17781000-17802600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:17781600-17810600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr17:17781800-17784800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr17:17781800-17785000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr17:17781800-17785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr17:17781800-17785000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr17:17781800-17785400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr17:17781800-17785400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr17:17781800-17786400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr17:17781800-17787800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr17:17782000-17784400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr17:17782000-17785000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr17:17782000-17785000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr17:17782000-17785000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:17782000-17785200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr17:17782000-17785600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr17:17782000-17786000	Weak transcription	NHDF-Ad	bronchial

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