Variant report

Variant	rs9891957
Chromosome Location	chr17:17744439-17744440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr17:17742637-17744584	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr17:17744210-17744490	MCF-7	breast:	n/a	n/a
3	POLR2A	chr17:17744061-17745725	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr17:17742741-17744758	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr17:17742600-17744794	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr17:17742483-17744566	K562	blood:	n/a	n/a
7	CHD2	chr17:17742712-17744633	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr17:17744081-17744981	K562	blood:	n/a	n/a
9	TCF12	chr17:17743019-17744692	ECC-1	luminal epithelium:	n/a	chr17:17743669-17743676 chr17:17743676-17743684
10	POLR2A	chr17:17744094-17744639	HCT-116	colon:	n/a	n/a
11	POLR2A	chr17:17742860-17744475	GM19193	blood:	n/a	n/a
12	POLR2A	chr17:17742498-17744736	MCF10A-Er-Src	breast:	n/a	n/a
13	TBP	chr17:17743174-17744789	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr17:17742673-17744614	H1-hESC	embryonic stem cell:	n/a	n/a
15	FOS	chr17:17744182-17744810	MCF10A-Er-Src	breast:	n/a	chr17:17744409-17744420 chr17:17744410-17744419
16	NFYA	chr17:17744238-17744597	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr17:17742392-17745250	HepG2	liver:	n/a	n/a
18	NR2C2	chr17:17743544-17744752	Hela-S3	cervix:	n/a	chr17:17743774-17743783
19	POLR2A	chr17:17744165-17744533	HepG2	liver:	n/a	n/a
20	ZNF143	chr17:17744214-17744463	Hela-S3	cervix:	n/a	n/a
21	TAF1	chr17:17744090-17744460	H1-hESC	embryonic stem cell:	n/a	n/a
22	TFAP2C	chr17:17742810-17745422	Hela-S3	cervix:	n/a	chr17:17745180-17745195
23	CEBPB	chr17:17744243-17744889	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr17:17742487-17744813	K562	blood:	n/a	n/a
25	USF2	chr17:17744156-17744843	Hela-S3	cervix:	n/a	n/a
26	SREBP2	chr17:17742514-17744556	GM12878	blood:	n/a	n/a
27	JUN	chr17:17742288-17745278	K562	blood:	n/a	chr17:17744936-17744947 chr17:17744409-17744420 chr17:17744410-17744419
28	POLR2A	chr17:17744101-17745035	K562	blood:	n/a	n/a
29	POLR2A	chr17:17742656-17744744	HUVEC	blood vessel:	n/a	n/a
30	JUND	chr17:17744235-17744537	H1-hESC	embryonic stem cell:	n/a	chr17:17744409-17744420 chr17:17744410-17744419
31	SIN3AK20	chr17:17742823-17744640	MCF-7	breast:	n/a	n/a
32	SP1	chr17:17742539-17744521	A549	lung:	n/a	chr17:17744207-17744216 chr17:17744209-17744222
33	POLR2A	chr17:17742673-17744858	U87	brain:	n/a	n/a
34	POLR2A	chr17:17742389-17744775	Raji	blood:	n/a	n/a
35	POLR2A	chr17:17742945-17744566	GM18526	blood:	n/a	n/a
36	MYC	chr17:17743084-17744485	K562	blood:	n/a	chr17:17744252-17744261 chr17:17744409-17744418
37	POLR2A	chr17:17744088-17744536	K562	blood:	n/a	n/a
38	TFAP2A	chr17:17744216-17745430	Hela-S3	cervix:	n/a	chr17:17745065-17745076 chr17:17745065-17745076 chr17:17744512-17744526 chr17:17745065-17745076 chr17:17745184-17745195 chr17:17745065-17745076
39	MXI1	chr17:17743147-17744681	Hela-S3	cervix:	n/a	n/a
40	HEY1	chr17:17742506-17744805	HepG2	liver:	n/a	chr17:17743428-17743443 chr17:17743788-17743803
41	POLR2A	chr17:17744059-17744864	SK-N-MC	brain:	n/a	n/a
42	POLR2A	chr17:17742308-17744905	Hela-S3	cervix:	n/a	n/a
43	STAT3	chr17:17744125-17744852	MCF10A-Er-Src	breast:	n/a	chr17:17744726-17744734 chr17:17744772-17744792 chr17:17744410-17744419 chr17:17744167-17744179
44	POLR2A	chr17:17742525-17744846	PBDE	blood:	n/a	n/a
45	POLR2A	chr17:17742731-17744656	IMR90	lung:	n/a	n/a
46	POLR2A	chr17:17742443-17744686	HCT-116	colon:	n/a	n/a
47	POLR2A	chr17:17742525-17744722	GM12878	blood:	n/a	n/a
48	ZEB1	chr17:17742521-17744635	HepG2	liver:	n/a	chr17:17743689-17743698
49	STAT3	chr17:17744114-17744886	MCF10A-Er-Src	breast:	n/a	chr17:17744726-17744734 chr17:17744772-17744792 chr17:17744410-17744419 chr17:17744167-17744179
50	MAX	chr17:17742527-17744530	A549	lung:	n/a	chr17:17744252-17744261 chr17:17742960-17742969 chr17:17744409-17744418

No.	Distal block	Cell Line	Cell type
1	chr17:17630393..17635386-chr17:17740565..17747416,7	MCF-7	breast:
2	chr17:17566304..17567837-chr17:17743104..17745974,2	K562	blood:
3	chr17:17597823..17600507-chr17:17743270..17745727,2	K562	blood:
4	chr17:17744210..17746760-chr17:17803236..17805554,2	MCF-7	breast:
5	chr17:17580850..17587926-chr17:17737733..17744809,17	MCF-7	breast:
6	chr17:17629833..17631855-chr17:17743142..17745640,2	MCF-7	breast:
7	chr17:17595881..17597399-chr17:17743800..17745983,2	K562	blood:
8	chr17:17589077..17591460-chr17:17741926..17746377,4	MCF-7	breast:
9	chr17:17652531..17655090-chr17:17743564..17745532,2	K562	blood:
10	chr17:17742750..17744659-chr17:17821292..17823063,2	K562	blood:
11	chr17:17585074..17586866-chr17:17743168..17745831,2	K562	blood:
12	chr17:17743541..17745850-chr17:17817426..17819910,2	K562	blood:
13	chr17:17742976..17745476-chr17:17800458..17803422,2	K562	blood:
14	chr17:17741798..17744569-chr17:17877349..17878945,2	K562	blood:
15	chr17:17655611..17657525-chr17:17743902..17745555,2	MCF-7	breast:
16	chr17:17744174..17744796-chr2:21022486..21023419,2	NB4	blood:
17	chr12:62653275..62654274-chr17:17743657..17744521,2	Hela-S3	cervix:
18	chr17:17576538..17579075-chr17:17742745..17745690,2	K562	blood:
19	chr17:17743205..17746557-chr17:17942007..17945064,4	MCF-7	breast:
20	chr17:17742275..17745067-chr17:17764534..17767182,3	MCF-7	breast:
21	chr17:17671386..17673399-chr17:17743752..17745349,2	MCF-7	breast:

Variant related genes	Relation type
SREBF1	TF binding region
ENSG00000175662	Chromatin interaction
ENSG00000171953	Chromatin interaction
ENSG00000135655	Chromatin interaction
ENSG00000118961	Chromatin interaction
ENSG00000108557	Chromatin interaction
ENSG00000223979	Chromatin interaction
ENSG00000141034	Chromatin interaction
ENSG00000198673	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1052299	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078399	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11078400	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1108646	0.80[EUR][1000 genomes]
rs1108648	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650649	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11650890	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11652144	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11652881	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs11654081	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs11656665	0.95[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11657074	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11657130	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11657423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11658309	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12450799	0.82[EUR][1000 genomes]
rs12936037	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12936927	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12938501	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12941039	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12941550	0.80[AMR][1000 genomes]
rs12943500	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12946746	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12952723	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12953299	1.00[CHB][hapmap]
rs16960744	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1889014	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2236513	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2297508	0.90[CEU][hapmap]
rs2350976	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs3183702	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35451946	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3744113	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3744115	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818717	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4244602	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4341796	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4413022	0.82[CEU][hapmap]
rs4924821	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4924822	0.90[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4924823	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4925114	0.90[CEU][hapmap]
rs4925115	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs4925116	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4925119	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4925120	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4925123	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4925125	0.85[AMR][1000 genomes]
rs4925126	0.81[AMR][1000 genomes]
rs4925129	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4925130	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs5002487	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs58638639	0.82[EUR][1000 genomes]
rs6502618	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502619	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6502625	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6502629	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7207395	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7214002	0.82[CEU][hapmap]
rs7222480	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7224815	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7359509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7501812	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7503334	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7503747	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8065497	0.88[ASN][1000 genomes]
rs8065563	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8066560	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8070128	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8078138	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8078583	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8078756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079321	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8080061	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8080823	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs950966	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9893690	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9894257	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9895335	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9895750	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9902941	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9906673	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9907246	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9907287	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9908017	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9908299	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9911281	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9915248	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9915776	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
16	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
17	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
18	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
21	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
22	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
25	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
27	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
28	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
29	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
30	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
31	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
32	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
33	nsv907768	chr17:17709136-17747289	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9891957	SREBF1	cis	Whole Blood	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17743000-17744600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr17:17743000-17744600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:17743000-17744600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr17:17743000-17745400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:17743000-17753000	Weak transcription	Fetal Kidney	kidney
6	chr17:17743200-17748400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr17:17743400-17745400	Enhancers	NHDF-Ad	bronchial
8	chr17:17743400-17747200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:17743400-17747800	Enhancers	Fetal Heart	heart
10	chr17:17743600-17745200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr17:17743800-17744600	Flanking Active TSS	A549	lung
12	chr17:17743800-17744600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr17:17744000-17744600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr17:17744000-17744600	Enhancers	Primary B cells from peripheral blood	blood
15	chr17:17744000-17744600	Enhancers	Primary T cells from cord blood	blood
16	chr17:17744000-17744600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr17:17744000-17744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:17744000-17744600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr17:17744000-17744600	Enhancers	GM12878-XiMat	blood
20	chr17:17744000-17744800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr17:17744000-17744800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:17744000-17744800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr17:17744000-17744800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr17:17744000-17744800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr17:17744000-17744800	Enhancers	Colon Smooth Muscle	Colon
26	chr17:17744000-17744800	Enhancers	Gastric	stomach
27	chr17:17744000-17744800	Enhancers	NH-A	brain
28	chr17:17744000-17745000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr17:17744000-17745000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:17744000-17745000	Enhancers	Fetal Intestine Small	intestine
31	chr17:17744000-17745000	Enhancers	HSMM	muscle
32	chr17:17744000-17745000	Enhancers	Osteobl	bone
33	chr17:17744000-17745200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr17:17744000-17745200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:17744000-17745200	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr17:17744000-17745200	Enhancers	Fetal Intestine Large	intestine
37	chr17:17744000-17745200	Enhancers	Fetal Stomach	stomach
38	chr17:17744000-17745200	Enhancers	HUVEC	blood vessel
39	chr17:17744000-17745400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr17:17744000-17745400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr17:17744000-17745400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:17744000-17745400	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr17:17744000-17745400	Enhancers	Primary T cells fromperipheralblood	blood
44	chr17:17744000-17745400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:17744000-17745400	Enhancers	Brain Angular Gyrus	brain
46	chr17:17744000-17745400	Enhancers	NHLF	lung
47	chr17:17744000-17745600	Enhancers	Brain Hippocampus Middle	brain
48	chr17:17744000-17745800	Enhancers	H1 Cell Line	embryonic stem cell
49	chr17:17744000-17745800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr17:17744000-17746000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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