Variant report

Variant	rs4925125
Chromosome Location	chr17:17794444-17794445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17794049..17794598-chr17:17822546..17823123,2	K562	blood:
2	chr17:17787613..17790063-chr17:17793245..17795199,3	MCF-7	breast:
3	chr17:17789580..17791271-chr17:17792564..17794567,2	K562	blood:
4	chr17:17794055..17794969-chr17:17822251..17823166,7	MCF-7	breast:
5	chr17:17794056..17795176-chr17:17936540..17937515,5	MCF-7	breast:
6	chr17:17793751..17795164-chr17:17822155..17823525,15	MCF-7	breast:
7	chr17:17794155..17794950-chr17:17897528..17898107,2	MCF-7	breast:
8	chr17:17793737..17796409-chr17:18087032..18088590,2	MCF-7	breast:
9	chr17:17793025..17795649-chr17:17941560..17943144,2	K562	blood:
10	chr17:17794101..17794947-chr17:17936514..17937448,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000091542	Chromatin interaction
ENSG00000266677	Chromatin interaction
ENSG00000171962	Chromatin interaction
ENSG00000171953	Chromatin interaction
ENSG00000141034	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10048206	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs1052299	0.90[GIH][hapmap];0.96[MEX][hapmap];0.87[AMR][1000 genomes]
rs11078400	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078403	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11078404	0.93[EUR][1000 genomes]
rs11078405	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11078406	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11078407	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11078408	1.00[ASW][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.92[YRI][hapmap]
rs1108646	0.88[ASN][1000 genomes]
rs1108648	0.86[AMR][1000 genomes]
rs11650649	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11650890	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11652881	0.80[MEX][hapmap]
rs11656840	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11657074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11657423	0.85[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs11657845	0.83[EUR][1000 genomes]
rs11658309	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11869536	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11870660	0.90[GIH][hapmap];0.92[MEX][hapmap]
rs11871899	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12452219	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12452254	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12600546	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[EUR][1000 genomes]
rs12603148	0.91[EUR][1000 genomes]
rs12936037	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12938501	0.87[AMR][1000 genomes]
rs12941039	0.87[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12943500	0.87[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs12952723	0.82[AMR][1000 genomes]
rs16960744	0.91[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1889018	0.87[GIH][hapmap];0.88[MEX][hapmap]
rs2236513	0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2350976	0.80[MEX][hapmap]
rs2350977	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28428991	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2955354	0.88[YRI][hapmap]
rs2955355	0.92[MEX][hapmap]
rs2955356	0.92[MEX][hapmap]
rs2955358	0.92[MEX][hapmap]
rs2955359	0.88[ASW][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs2955370	0.88[YRI][hapmap]
rs2955371	0.87[CEU][hapmap]
rs2955372	0.92[MEX][hapmap]
rs2955377	0.88[ASW][hapmap];0.92[YRI][hapmap]
rs2955378	0.88[ASW][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs2955380	0.88[ASW][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs2955381	0.88[YRI][hapmap]
rs2955382	0.84[MEX][hapmap]
rs2955383	0.92[MEX][hapmap]
rs2955384	0.88[ASW][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs2955385	0.88[ASW][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs3183702	0.88[ASW][hapmap];0.82[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35451946	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3744113	0.86[AMR][1000 genomes]
rs3744115	0.83[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.87[AMR][1000 genomes]
rs4077198	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4077828	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4244602	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4257260	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs4299203	0.90[GIH][hapmap];0.92[MEX][hapmap]
rs4321247	0.85[EUR][1000 genomes]
rs4341796	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs4343339	0.91[EUR][1000 genomes]
rs4368210	0.88[ASW][hapmap];0.80[LWK][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs4413022	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs4414547	0.91[EUR][1000 genomes]
rs4426402	0.94[ASW][hapmap];0.80[YRI][hapmap]
rs4459604	0.87[MEX][hapmap]
rs4470201	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4506969	0.88[YRI][hapmap]
rs4534911	0.91[EUR][1000 genomes]
rs4553680	0.90[EUR][1000 genomes]
rs4584886	0.80[LWK][hapmap];0.91[MEX][hapmap];0.88[YRI][hapmap]
rs4616340	0.91[EUR][1000 genomes]
rs4924822	0.88[ASW][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4924823	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4924832	0.92[MEX][hapmap]
rs4925116	0.82[AMR][1000 genomes]
rs4925119	0.82[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4925120	0.91[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4925123	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4925126	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4925129	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4925130	0.95[CEU][hapmap];0.90[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5002487	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62064156	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62064158	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6502618	0.86[AMR][1000 genomes]
rs6502619	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6502622	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6502624	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6502625	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs6502626	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6502627	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes]
rs6502629	0.87[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs6502632	0.92[MEX][hapmap];0.82[YRI][hapmap]
rs66531105	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67253360	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7207043	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7207395	0.91[EUR][1000 genomes]
rs7207821	0.88[YRI][hapmap]
rs7208190	0.90[EUR][1000 genomes]
rs7211714	0.87[ASW][hapmap]
rs7212167	0.92[MEX][hapmap];0.82[YRI][hapmap]
rs7212447	0.87[ASW][hapmap]
rs7213225	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs7214002	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7214536	0.92[EUR][1000 genomes]
rs7219320	0.83[GIH][hapmap];0.92[MEX][hapmap]
rs7222480	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7224815	0.87[CEU][hapmap]
rs7359509	0.87[GIH][hapmap];0.88[MEX][hapmap]
rs7406982	0.88[ASW][hapmap];0.92[MEX][hapmap];0.88[YRI][hapmap]
rs7501812	0.90[GIH][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes]
rs7503334	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8065416	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs8065497	0.83[EUR][1000 genomes]
rs8065563	0.95[CEU][hapmap];0.96[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8065970	0.91[EUR][1000 genomes]
rs8066560	0.85[GIH][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs8066982	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs8068175	0.90[GIH][hapmap];0.88[MEX][hapmap]
rs8068820	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8070128	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8070722	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8070748	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs8073001	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8075965	0.88[EUR][1000 genomes]
rs8076747	0.89[EUR][1000 genomes]
rs8077530	0.89[EUR][1000 genomes]
rs8078105	0.95[CEU][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes]
rs8078138	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8078583	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8078756	0.85[AMR][1000 genomes]
rs8079321	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8080061	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080823	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs950966	0.95[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9635697	0.91[EUR][1000 genomes]
rs9635698	0.90[EUR][1000 genomes]
rs9890341	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9891957	0.85[AMR][1000 genomes]
rs9893690	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9894257	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9895335	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9895750	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9896837	0.88[ASW][hapmap];0.87[MEX][hapmap];0.88[YRI][hapmap]
rs9899634	0.85[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs9902941	0.85[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes]
rs9904163	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9905284	0.91[EUR][1000 genomes]
rs9906673	0.86[AMR][1000 genomes]
rs9907246	0.87[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9907287	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908017	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908299	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9908832	0.90[EUR][1000 genomes]
rs9911281	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9912895	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9913277	0.87[MEX][hapmap]
rs9913724	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9915248	0.93[GIH][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes]
rs9915776	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
8	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
11	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
12	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
13	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
14	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
16	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
17	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
18	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4925125	TOM1L2	cis	cerebellum	SCAN
rs4925125	TOM1L2	cis	parietal	SCAN
rs4925125	SREBF1	cis	Whole Blood	GTEx
rs4925125	AC122129.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17764200-17803000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr17:17764400-17799600	Weak transcription	A549	lung
3	chr17:17767600-17807400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:17769200-17804600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:17769600-17795200	Strong transcription	Primary T cells from cord blood	blood
6	chr17:17776400-17803200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:17778200-17796200	Weak transcription	Hela-S3	cervix
8	chr17:17781000-17802600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr17:17781600-17810600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr17:17782200-17801600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:17782200-17803800	Weak transcription	Stomach Mucosa	stomach
12	chr17:17782200-17817000	Weak transcription	Fetal Kidney	kidney
13	chr17:17782600-17796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:17783000-17802200	Weak transcription	Dnd41	blood
15	chr17:17783000-17808200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:17783200-17798400	Weak transcription	NH-A	brain
17	chr17:17786400-17794600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr17:17786400-17795000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:17787400-17794800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr17:17787400-17796200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr17:17788000-17797200	Weak transcription	Ovary	ovary
22	chr17:17788200-17796400	Weak transcription	Primary B cells from cord blood	blood
23	chr17:17788600-17794800	Weak transcription	HMEC	breast
24	chr17:17788800-17794600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr17:17788800-17796200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr17:17788800-17796400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr17:17788800-17796400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr17:17788800-17800000	Weak transcription	Psoas Muscle	Psoas
29	chr17:17788800-17800200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr17:17789600-17796200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr17:17789800-17802400	Strong transcription	Stomach Smooth Muscle	stomach
32	chr17:17790000-17794800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr17:17790000-17796200	Weak transcription	Colonic Mucosa	Colon
34	chr17:17790000-17801400	Weak transcription	Small Intestine	intestine
35	chr17:17790200-17795400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:17790200-17796000	Weak transcription	Colon Smooth Muscle	Colon
37	chr17:17790200-17800200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr17:17790200-17803800	Strong transcription	Fetal Intestine Small	intestine
39	chr17:17790400-17802200	Strong transcription	NHEK	skin
40	chr17:17790600-17795400	Weak transcription	Liver	Liver
41	chr17:17790600-17795600	Weak transcription	Brain Anterior Caudate	brain
42	chr17:17790600-17802800	Weak transcription	Right Atrium	heart
43	chr17:17790800-17794600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr17:17791000-17803000	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr17:17791400-17795000	Weak transcription	Brain Hippocampus Middle	brain
46	chr17:17791400-17796200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr17:17791400-17796200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr17:17791400-17796200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr17:17791600-17796200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr17:17791800-17795800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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