Variant report

Variant	rs4470201
Chromosome Location	chr17:17844870-17844871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17823331..17826317-chr17:17843856..17846226,2	MCF-7	breast:

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10048206	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1052299	0.83[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs11078400	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11078403	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078404	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11078405	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11078406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078407	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078408	0.85[CHD][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.83[EUR][1000 genomes]
rs1108648	0.80[CEU][hapmap]
rs11650649	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11650890	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11652881	0.80[MEX][hapmap]
rs11656840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657074	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11657423	0.85[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs11657773	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11657845	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11658309	0.85[AMR][1000 genomes]
rs11869536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11870660	0.82[ASW][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.82[EUR][1000 genomes]
rs11871899	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12452219	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12452254	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12600546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12603148	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12936037	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12941039	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs12943500	0.91[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs12953299	0.80[CEU][hapmap]
rs16960744	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs1889018	0.87[GIH][hapmap];0.88[MEX][hapmap]
rs2236513	0.82[CEU][hapmap]
rs2350976	0.80[MEX][hapmap]
rs2350977	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28428991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955355	0.92[MEX][hapmap]
rs2955356	0.92[MEX][hapmap]
rs2955358	0.92[MEX][hapmap]
rs2955359	0.92[MEX][hapmap]
rs2955370	0.82[JPT][hapmap]
rs2955371	0.91[CEU][hapmap]
rs2955372	0.92[MEX][hapmap]
rs2955378	0.92[MEX][hapmap]
rs2955380	0.92[MEX][hapmap]
rs2955382	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs2955383	0.92[MEX][hapmap]
rs2955384	0.92[MEX][hapmap]
rs2955385	0.92[MEX][hapmap]
rs3183702	0.87[CEU][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap]
rs35451946	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3744115	0.93[GIH][hapmap];0.96[MEX][hapmap]
rs4077198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244602	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4257260	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4299203	0.82[ASW][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.82[EUR][1000 genomes]
rs4321247	0.89[EUR][1000 genomes]
rs4341796	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4343339	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4368210	0.92[MEX][hapmap]
rs4413022	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4414547	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4459604	0.87[MEX][hapmap]
rs4471742	0.83[EUR][1000 genomes]
rs4534911	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4553680	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4584886	0.91[MEX][hapmap]
rs4616340	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924822	0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs4924823	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4924832	0.92[MEX][hapmap]
rs4925119	0.90[GIH][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap]
rs4925120	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes]
rs4925123	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4925125	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4925126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4925129	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4925130	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5002487	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57728924	0.82[EUR][1000 genomes]
rs62064156	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62064158	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072049	0.83[EUR][1000 genomes]
rs6502619	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6502622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502624	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502625	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6502626	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6502627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6502629	0.91[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs6502632	0.92[MEX][hapmap]
rs66531105	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67253360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207043	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7207395	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7208190	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7212167	0.92[MEX][hapmap]
rs7213225	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7214002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7214536	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7219320	0.82[ASW][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.82[EUR][1000 genomes]
rs7222480	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7224815	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7359509	0.87[GIH][hapmap];0.88[MEX][hapmap]
rs7406982	0.92[MEX][hapmap]
rs7501812	0.90[GIH][hapmap];0.87[MEX][hapmap]
rs7503334	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8065416	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8065563	1.00[CEU][hapmap];0.96[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8065970	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8066560	0.85[GIH][hapmap];0.83[MEX][hapmap]
rs8066982	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8068175	0.82[ASW][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.82[EUR][1000 genomes]
rs8068820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070128	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8070722	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070748	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8073001	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075965	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8076747	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8077338	0.81[EUR][1000 genomes]
rs8077530	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8078105	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8078138	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8078583	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8079321	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8080061	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8080823	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs950966	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9635697	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9635698	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9890341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895750	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9896837	0.87[MEX][hapmap]
rs9899634	0.85[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs9902941	0.85[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs9904163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9905284	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9907246	0.91[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9907287	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs9908017	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9908299	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9908832	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9911281	0.81[AMR][1000 genomes]
rs9912895	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913277	0.87[MEX][hapmap]
rs9913724	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914127	0.83[EUR][1000 genomes]
rs9915248	0.83[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17828200-17861000	Weak transcription	Primary B cells from cord blood	blood
2	chr17:17828600-17858000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:17836400-17853000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr17:17836600-17846600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr17:17836800-17846000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:17837000-17845400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:17837400-17847800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:17837800-17847600	Enhancers	HMEC	breast
9	chr17:17838000-17845000	Enhancers	Right Ventricle	heart
10	chr17:17838000-17848600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr17:17838200-17845600	Enhancers	Right Atrium	heart
12	chr17:17838600-17845400	Enhancers	Esophagus	oesophagus
13	chr17:17838600-17846600	Enhancers	Duodenum Mucosa	Duodenum
14	chr17:17838800-17846000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:17838800-17846000	Enhancers	Psoas Muscle	Psoas
16	chr17:17839400-17858800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:17839400-17860200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:17839600-17846600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:17839600-17846600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr17:17839800-17846600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr17:17839800-17859800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr17:17840400-17845000	Enhancers	Stomach Mucosa	stomach
23	chr17:17840800-17846000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr17:17840800-17846600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:17840800-17846800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr17:17841000-17846000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr17:17841000-17846400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr17:17841000-17846800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr17:17841000-17847400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr17:17841400-17846000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr17:17841400-17846600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr17:17841600-17846600	Weak transcription	Pancreas	Pancrea
33	chr17:17841800-17846000	Enhancers	HSMMtube	muscle
34	chr17:17842000-17846000	Enhancers	NHEK	skin
35	chr17:17842200-17846600	Enhancers	Hela-S3	cervix
36	chr17:17842400-17846600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr17:17842800-17846000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr17:17842800-17846800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr17:17843000-17848400	Enhancers	NHLF	lung
40	chr17:17843200-17847600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr17:17843200-17848400	Enhancers	Left Ventricle	heart
42	chr17:17843200-17848600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr17:17843400-17845200	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr17:17843400-17848200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:17843400-17848600	Enhancers	Ovary	ovary
46	chr17:17843400-17849000	Enhancers	Fetal Lung	lung
47	chr17:17843600-17845000	Enhancers	Brain Cingulate Gyrus	brain
48	chr17:17843600-17845000	Enhancers	Fetal Muscle Trunk	muscle
49	chr17:17843600-17845200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr17:17843600-17845200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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