Variant report

Variant	rs4927251
Chromosome Location	chr1:56024686-56024687
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17101352	1.00[CEU][hapmap]
rs17112378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112601	1.00[CEU][hapmap]
rs17112607	1.00[CEU][hapmap]
rs17112640	1.00[CEU][hapmap]
rs17112655	1.00[CEU][hapmap]
rs17112669	1.00[CEU][hapmap]
rs35813848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4927253	1.00[EUR][1000 genomes]
rs58581179	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66579261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66600550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66691492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66792170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66853464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66942850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67487376	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67669773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667882	0.81[ASN][1000 genomes]
rs72908681	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9793486	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56011600-56026400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:56018600-56025800	Weak transcription	Aorta	Aorta
3	chr1:56020200-56026400	Enhancers	Fetal Heart	heart
4	chr1:56021400-56026600	Enhancers	Fetal Lung	lung
5	chr1:56022000-56025000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:56023000-56027000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:56023200-56024800	Enhancers	Right Atrium	heart
8	chr1:56023600-56025200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:56024200-56024800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:56024200-56025200	Enhancers	Left Ventricle	heart
11	chr1:56024200-56026000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:56024200-56026000	Enhancers	Ovary	ovary
13	chr1:56024200-56026200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:56024200-56026400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56024200-56026400	Enhancers	NHDF-Ad	bronchial
16	chr1:56024400-56024800	Enhancers	Right Ventricle	heart
17	chr1:56024400-56025800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:56024400-56026600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:56024600-56025600	Weak transcription	Fetal Muscle Trunk	muscle

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