Variant report

Variant	rs494808
Chromosome Location	chr1:215085600-215085601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10779630	0.82[AMR][1000 genomes]
rs12750128	0.87[EUR][1000 genomes]
rs472961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475341	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs476910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs477485	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478664	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs497870	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs506436	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs512597	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs520394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs526746	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs527769	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs530931	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs554343	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs557765	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs558728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs558879	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs561766	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs564291	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs566170	0.93[JPT][hapmap]
rs6658958	0.93[JPT][hapmap]
rs6684902	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs896652	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215085200-215085600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:215085200-215087000	Enhancers	Fetal Brain Male	brain
3	chr1:215085400-215086000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:215085400-215087400	Enhancers	Fetal Brain Female	brain
5	chr1:215085600-215085800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:215085600-215085800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:215085600-215085800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:215085600-215085800	Enhancers	Gastric	stomach

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