Variant report

Variant	rs564291
Chromosome Location	chr1:215076217-215076218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:215071826..215073413-chr1:215073574..215076518,2	K562	blood:
2	chr1:215075411..215077272-chr1:215077759..215080154,2	MCF-7	breast:
3	chr1:215068841..215070967-chr1:215076035..215077842,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12750128	0.87[EUR][1000 genomes]
rs1779679	0.83[AFR][1000 genomes]
rs472961	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs475341	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs476910	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477485	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs478664	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs494808	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs497870	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs506436	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs512597	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs520394	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527769	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530931	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs554343	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs557765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558728	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs558879	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs561766	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs566170	0.93[JPT][hapmap]
rs6540867	0.92[YRI][hapmap]
rs6658958	0.93[JPT][hapmap]
rs6684902	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs896652	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215072200-215076800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215072800-215077000	Enhancers	NHDF-Ad	bronchial
3	chr1:215072800-215077000	Enhancers	Osteobl	bone
4	chr1:215073400-215076800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215073400-215077000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:215073600-215076800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:215073600-215077000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:215073600-215077000	Enhancers	HMEC	breast
9	chr1:215074000-215077000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:215074000-215077000	Enhancers	NHEK	skin
11	chr1:215074400-215077000	Enhancers	NHLF	lung
12	chr1:215074600-215077000	Enhancers	HUVEC	blood vessel
13	chr1:215074800-215076400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:215074800-215076600	Enhancers	HSMM	muscle
15	chr1:215074800-215076800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:215074800-215076800	Enhancers	Hela-S3	cervix
17	chr1:215074800-215077000	Enhancers	NH-A	brain
18	chr1:215075400-215076400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:215075400-215077200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:215076000-215076400	Flanking Active TSS	A549	lung
21	chr1:215076200-215077000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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