Variant report

Variant	rs4955420
Chromosome Location	chr3:49208865-49208866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr3:49208468-49209112	HepG2	liver:	n/a	chr3:49208776-49208783
2	CTCF	chr3:49208293-49208947	GM19240	blood:	n/a	chr3:49208617-49208633 chr3:49208616-49208634 chr3:49208619-49208628 chr3:49208619-49208632 chr3:49208621-49208631
3	REST	chr3:49208498-49209042	SK-N-SH	brain:	n/a	chr3:49208982-49208995 chr3:49208985-49208998 chr3:49208898-49208911
4	JUN	chr3:49208074-49209390	K562	blood:	n/a	chr3:49208996-49209005 chr3:49209193-49209202
5	YY1	chr3:49208541-49208990	H1-hESC	embryonic stem cell:	n/a	chr3:49208962-49208973 chr3:49208729-49208743 chr3:49208567-49208581 chr3:49208622-49208636 chr3:49208625-49208639 chr3:49208627-49208636
6	MAX	chr3:49208540-49209050	GM12878	blood:	n/a	chr3:49208776-49208783
7	MXI1	chr3:49208529-49209093	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr3:49208488-49209276	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr3:49208733-49209195	K562	blood:	n/a	n/a
10	NANOG	chr3:49208486-49209002	H1-hESC	embryonic stem cell:	n/a	chr3:49208876-49208885
11	MAFF	chr3:49208862-49208914	K562	blood:	n/a	n/a
12	RCOR1	chr3:49208740-49209102	GM12878	blood:	n/a	n/a
13	POLR2A	chr3:49208618-49209247	HepG2	liver:	n/a	n/a
14	SP1	chr3:49208665-49209123	K562	blood:	n/a	chr3:49208962-49208971 chr3:49208994-49209008 chr3:49208994-49209003 chr3:49208958-49208972 chr3:49208993-49209005 chr3:49208965-49208979 chr3:49208961-49208973 chr3:49208961-49208973 chr3:49208995-49209004 chr3:49208994-49209003 chr3:49208993-49209005
15	POLR2A	chr3:49208682-49208918	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr3:49208444-49208952	GM12892	blood:	n/a	chr3:49208617-49208633 chr3:49208616-49208634 chr3:49208619-49208628 chr3:49208619-49208632 chr3:49208621-49208631
17	CTBP2	chr3:49208354-49209126	H1-hESC	embryonic stem cell:	n/a	n/a
18	YY1	chr3:49208463-49209115	SK-N-SH_RA	brain:	n/a	chr3:49208962-49208973 chr3:49208729-49208743 chr3:49208567-49208581 chr3:49208622-49208636 chr3:49208625-49208639 chr3:49208627-49208636
19	MAX	chr3:49208531-49209102	K562	blood:	n/a	chr3:49208776-49208783
20	MYC	chr3:49208486-49209104	K562	blood:	n/a	chr3:49208776-49208783
21	SP1	chr3:49208611-49209204	A549	lung:	n/a	chr3:49208962-49208971 chr3:49208994-49209008 chr3:49208994-49209003 chr3:49209190-49209202 chr3:49209190-49209202 chr3:49208958-49208972 chr3:49209191-49209200 chr3:49208993-49209005 chr3:49208965-49208979 chr3:49208961-49208973 chr3:49208961-49208973 chr3:49208995-49209004 chr3:49209191-49209201 chr3:49208994-49209003 chr3:49208993-49209005
22	RAD21	chr3:49208399-49209163	IMR90	lung:	n/a	chr3:49208622-49208634 chr3:49208618-49208632 chr3:49208610-49208623 chr3:49208617-49208636 chr3:49208622-49208632 chr3:49208620-49208633
23	USF2	chr3:49208558-49208927	H1-hESC	embryonic stem cell:	n/a	chr3:49208677-49208693
24	POLR2A	chr3:49208478-49209394	HUVEC	blood vessel:	n/a	n/a
25	POLR2A	chr3:49208562-49209222	A549	lung:	n/a	n/a
26	GABPA	chr3:49208708-49209019	K562	blood:	n/a	n/a
27	POLR2A	chr3:49208536-49209268	HUVEC	blood vessel:	n/a	n/a
28	MAX	chr3:49208468-49209211	ECC-1	luminal epithelium:	n/a	chr3:49208776-49208783
29	CTCF	chr3:49208131-49209305	SK-N-SH	brain:	n/a	chr3:49208617-49208633 chr3:49208616-49208634 chr3:49208619-49208628 chr3:49208619-49208632 chr3:49208621-49208631
30	GABPA	chr3:49208415-49209188	H1-hESC	embryonic stem cell:	n/a	chr3:49209155-49209164
31	YY1	chr3:49208765-49208947	HCT-116	colon:	n/a	n/a
32	RAD21	chr3:49208438-49208906	ECC-1	luminal epithelium:	n/a	chr3:49208622-49208634 chr3:49208618-49208632 chr3:49208610-49208623 chr3:49208617-49208636 chr3:49208622-49208632 chr3:49208620-49208633
33	POLR2A	chr3:49208610-49208980	A549	lung:	n/a	n/a
34	MAZ	chr3:49208415-49209437	K562	blood:	n/a	chr3:49208776-49208783
35	MAX	chr3:49208421-49209194	ECC-1	luminal epithelium:	n/a	chr3:49208776-49208783
36	TAF1	chr3:49208794-49209149	SK-N-SH	brain:	n/a	n/a
37	CHD2	chr3:49208783-49209162	HepG2	liver:	n/a	chr3:49208998-49209008 chr3:49208970-49208980
38	KAP1	chr3:49208624-49209037	U2OS	brain:	n/a	n/a
39	POLR2A	chr3:49208717-49209174	U87	brain:	n/a	n/a
40	STAT5A	chr3:49208367-49209022	GM12878	blood:	n/a	chr3:49208452-49208461 chr3:49208453-49208462 chr3:49208990-49209002
41	REST	chr3:49208845-49208988	K562	blood:	n/a	chr3:49208898-49208911
42	BHLHE40	chr3:49208471-49209212	K562	blood:	n/a	chr3:49208677-49208693 chr3:49208999-49209015
43	POLR2A	chr3:49208369-49209325	H1-neurons	neurons:	n/a	n/a
44	HEY1	chr3:49208645-49208906	K562	blood:	n/a	n/a
45	E2F6	chr3:49208495-49209205	A549	lung:	n/a	chr3:49208679-49208689
46	MXI1	chr3:49208067-49212337	SK-N-SH	brain:	n/a	chr3:49211019-49211034 chr3:49211021-49211036
47	SIN3AK20	chr3:49208414-49209184	SK-N-SH	brain:	n/a	n/a
48	POLR2A	chr3:49208344-49209276	H1-neurons	neurons:	n/a	n/a
49	TBL1XR1	chr3:49208584-49209070	K562	blood:	n/a	n/a
50	IRF1	chr3:49208692-49209113	K562	blood:	n/a	chr3:49208991-49209005

No.	Distal block	Cell Line	Cell type
1	chr3:49064349..49066955-chr3:49207317..49210098,3	MCF-7	breast:
2	chr3:49208330..49210147-chr3:49711158..49712878,2	K562	blood:
3	chr3:49202977..49205406-chr3:49206821..49209199,3	MCF-7	breast:
4	chr3:49202213..49205140-chr3:49207105..49209971,4	MCF-7	breast:
5	chr3:49059138..49060690-chr3:49207989..49210294,2	K562	blood:
6	chr3:49207667..49210496-chr3:49210545..49213014,4	K562	blood:
7	chr3:49207629..49210061-chr3:49211282..49215140,3	MCF-7	breast:
8	chr3:49207496..49209154-chr3:49376769..49379124,2	MCF-7	breast:
9	chr3:49195402..49201533-chr3:49207296..49212401,9	MCF-7	breast:
10	chr3:49156732..49159393-chr3:49207552..49211410,3	K562	blood:
11	chr1:45791998..45792794-chr3:49208715..49209353,2	NB4	blood:

Variant related genes	Relation type
KLHDC8B	TF binding region
ENSG00000178149	Chromatin interaction
ENSG00000172037	Chromatin interaction
ENSG00000186603	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000185909	Chromatin interaction
ENSG00000177352	Chromatin interaction
ENSG00000164062	Chromatin interaction
ENSG00000114316	Chromatin interaction
ENSG00000272434	Chromatin interaction
ENSG00000172046	Chromatin interaction
ENSG00000270441	Chromatin interaction
ENSG00000178035	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10049462	1.00[JPT][hapmap]
rs10154895	0.92[ASN][1000 genomes]
rs10865954	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130182	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130184	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134043	0.91[LWK][hapmap];0.81[MKK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs11552724	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11706052	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs11706189	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11712006	0.82[ASN][1000 genomes]
rs11713297	0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11715581	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716334	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11717524	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11719220	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs11920267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs12487580	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12490393	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493001	0.87[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs12629759	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12631989	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap]
rs12636030	0.92[ASN][1000 genomes]
rs12637576	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13064780	0.81[AMR][1000 genomes]
rs13064784	0.87[ASN][1000 genomes]
rs13068038	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs13077498	1.00[JPT][hapmap]
rs13096406	0.84[ASN][1000 genomes]
rs2117938	0.89[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs2304442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2334958	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3212	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[ASN][1000 genomes]
rs34326553	0.82[ASN][1000 genomes]
rs34566463	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs34580506	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs34889065	0.82[ASN][1000 genomes]
rs35060561	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35174559	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs35218722	0.81[AMR][1000 genomes]
rs35283189	0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs35673421	0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs36133651	0.82[AFR][1000 genomes]
rs3774800	1.00[GIH][hapmap];0.90[TSI][hapmap]
rs4279134	0.84[ASW][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[ASN][1000 genomes]
rs4308307	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367098	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4499638	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4513485	0.94[ASW][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.87[ASN][1000 genomes]
rs4521268	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs4536858	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955410	0.94[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4955418	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4974078	1.00[CHD][hapmap]
rs4974080	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5030795	0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs55713230	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61583136	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62262517	0.85[ASN][1000 genomes]
rs6414613	0.84[ASW][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs6446205	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs66991555	0.92[ASN][1000 genomes]
rs6770112	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6772452	0.84[ASW][hapmap]
rs6779394	1.00[JPT][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs6781790	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs6784111	1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs6790914	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6794924	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6795756	0.83[EUR][1000 genomes]
rs7432989	0.87[CHD][hapmap];0.85[TSI][hapmap]
rs7615235	0.85[ASN][1000 genomes]
rs7621015	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs7626445	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs7632267	0.89[AFR][1000 genomes]
rs7645551	0.80[AFR][1000 genomes]
rs7652746	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9311439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9814987	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9835439	0.87[ASN][1000 genomes]
rs9837237	0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9837625	0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9840050	0.82[CHB][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs9846123	0.84[ASW][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs9847839	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs9850917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9855123	0.87[ASN][1000 genomes]
rs9862483	0.92[ASN][1000 genomes]
rs9880088	0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9880309	1.00[JPT][hapmap]
rs9990153	0.87[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs4955420	SEMA3G	cis	cerebellum	SCAN
rs4955420	WDR6	cis	Esophagus Mucosa	GTEx
rs4955420	WDR6	cis	Muscle Skeletal	GTEx
rs4955420	C3orf62	cis	cerebellum	SCAN
rs4955420	WDR6	cis	Heart Left Ventricle	GTEx
rs4955420	AMT	cis	parietal	SCAN
rs4955420	WDR6	cis	Adipose Subcutaneous	GTEx
rs4955420	CCDC71	cis	cerebellum	SCAN
rs4955420	CCDC36	cis	lung	GTEx
rs4955420	WDR6	cis	Whole Blood	GTEx
rs4955420	P4HTM	cis	parietal	SCAN
rs4955420	WDR6	cis	Artery Tibial	GTEx
rs4955420	WDR6	cis	Nerve Tibial	GTEx
rs4955420	CCDC36	cis	Artery Tibial	GTEx
rs4955420	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs4955420	WDR6	cis	cerebellum	SCAN
rs4955420	CCDC36	cis	Esophagus Muscularis	GTEx
rs4955420	AMT	cis	cerebellum	SCAN
rs4955420	DALRD3	cis	cerebellum	SCAN
rs4955420	NICN1	cis	multi-tissue	Pritchard
rs4955420	AMT	cis	multi-tissue	Pritchard
rs4955420	WDR6	cis	parietal	SCAN
rs4955420	AMT	cis	Thyroid	GTEx
rs4955420	NCKIPSD	cis	multi-tissue	Pritchard
rs4955420	WDR6	cis	lung	GTEx
rs4955420	TLR9	cis	parietal	SCAN
rs4955420	WDR6	cis	lymphoblastoid	seeQTL
rs4955420	WDR6	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49208200-49209000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:49208200-49209200	Flanking Active TSS	HMEC	breast
3	chr3:49208200-49209800	Flanking Active TSS	Dnd41	blood
4	chr3:49208200-49210000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:49208200-49210200	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr3:49208200-49210400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:49208200-49211200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:49208200-49211400	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr3:49208200-49212000	Flanking Active TSS	Brain Germinal Matrix	brain
10	chr3:49208400-49209200	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr3:49208400-49209200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
12	chr3:49208400-49209200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:49208400-49209200	Active TSS	Hela-S3	cervix
14	chr3:49208400-49209400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr3:49208400-49209400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:49208400-49209600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr3:49208400-49209600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:49208400-49209600	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr3:49208400-49209600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr3:49208400-49209600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr3:49208400-49209600	Active TSS	Psoas Muscle	Psoas
22	chr3:49208400-49209600	Active TSS	HSMMtube	muscle
23	chr3:49208400-49209800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr3:49208400-49209800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
25	chr3:49208400-49209800	Active TSS	Brain Substantia Nigra	brain
26	chr3:49208400-49209800	Flanking Active TSS	Fetal Thymus	thymus
27	chr3:49208400-49209800	Active TSS	Right Ventricle	heart
28	chr3:49208400-49209800	Active TSS	A549	lung
29	chr3:49208400-49210000	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr3:49208400-49210000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr3:49208400-49210000	Active TSS	Ovary	ovary
32	chr3:49208400-49210200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr3:49208400-49210200	Flanking Active TSS	Liver	Liver
34	chr3:49208400-49210200	Active TSS	Small Intestine	intestine
35	chr3:49208400-49210400	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr3:49208400-49210600	Active TSS	Fetal Kidney	kidney
37	chr3:49208600-49209000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:49208600-49209000	Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr3:49208600-49209000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:49208600-49209000	Flanking Active TSS	Fetal Brain Male	brain
41	chr3:49208600-49209000	Flanking Active TSS	Placenta	Placenta
42	chr3:49208600-49209000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
43	chr3:49208600-49209000	Active TSS	Stomach Mucosa	stomach
44	chr3:49208600-49209000	Active TSS	Thymus	Thymus
45	chr3:49208600-49209000	Flanking Active TSS	HUVEC	blood vessel
46	chr3:49208600-49209000	Active TSS	Monocytes-CD14+_RO01746	blood
47	chr3:49208600-49209000	Active TSS	Osteobl	bone
48	chr3:49208600-49209200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:49208600-49209200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:49208600-49209200	Active TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links