Variant report

Variant	rs4955418
Chromosome Location	chr3:49200627-49200628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:51)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:51 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49200232-49200970	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:49200187-49201012	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr3:49200058-49200915	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:49198751-49201892	HL-60	blood:	n/a	n/a
5	POLR2A	chr3:49198739-49201514	K562	blood:	n/a	n/a
6	POLR2A	chr3:49200373-49200628	GM12891	blood:	n/a	n/a
7	POLR2A	chr3:49200217-49200788	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr3:49198510-49204140	GM12892	blood:	n/a	n/a
9	POLR2A	chr3:49200038-49200879	HCT-116	colon:	n/a	n/a
10	POLR2A	chr3:49200479-49200747	K562	blood:	n/a	n/a
11	POLR2A	chr3:49200240-49200937	U87	brain:	n/a	n/a
12	POLR2A	chr3:49200072-49200925	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr3:49200405-49200786	PANC-1	pancreas:	n/a	n/a
14	POLR2A	chr3:49200556-49200892	GM12892	blood:	n/a	n/a
15	POLR2A	chr3:49200093-49201882	GM12892	blood:	n/a	n/a
16	POLR2A	chr3:49200061-49201936	K562	blood:	n/a	n/a
17	POLR2A	chr3:49200261-49201151	GM12878	blood:	n/a	n/a
18	POLR2A	chr3:49200481-49200812	A549	lung:	n/a	n/a
19	POLR2A	chr3:49200483-49200838	MCF-7	breast:	n/a	n/a
20	POLR2A	chr3:49200072-49201232	HCT-116	colon:	n/a	n/a
21	POLR2A	chr3:49200054-49200910	GM12878	blood:	n/a	n/a
22	POLR2A	chr3:49198535-49201959	GM12892	blood:	n/a	n/a
23	POLR2A	chr3:49200065-49200934	HUVEC	blood vessel:	n/a	n/a
24	POLR2A	chr3:49200090-49201015	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr3:49200068-49200832	PANC-1	pancreas:	n/a	n/a
26	POLR2A	chr3:49200066-49201010	GM12891	blood:	n/a	n/a
27	POLR2A	chr3:49200497-49200726	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr3:49200205-49200720	MCF-7	breast:	n/a	n/a
29	USF2	chr3:49200132-49201205	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr3:49200447-49200883	ECC-1	luminal epithelium:	n/a	n/a
31	POLR2A	chr3:49197955-49203552	SK-N-MC	brain:	n/a	n/a
32	POLR2A	chr3:49200178-49200797	MCF10A-Er-Src	breast:	n/a	n/a
33	CTCF	chr3:49200620-49200770	GM12864	blood:	n/a	n/a
34	POLR2A	chr3:49200481-49200809	A549	lung:	n/a	n/a
35	POLR2A	chr3:49200066-49200927	K562	blood:	n/a	n/a
36	POLR2A	chr3:49200089-49200830	HL-60	blood:	n/a	n/a
37	POLR2A	chr3:49199225-49200865	HepG2	liver:	n/a	n/a
38	POLR2A	chr3:49200095-49200827	GM12878	blood:	n/a	n/a
39	POLR2A	chr3:49200535-49200754	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr3:49200475-49200782	HepG2	liver:	n/a	n/a
41	POLR2A	chr3:49200123-49200770	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr3:49200522-49200782	A549	lung:	n/a	n/a
43	POLR2A	chr3:49200065-49202013	GM12891	blood:	n/a	n/a
44	POLR2A	chr3:49200537-49200774	MCF-7	breast:	n/a	n/a
45	POLR2A	chr3:49198739-49201658	Hela-S3	cervix:	n/a	n/a
46	POLR2A	chr3:49200032-49200854	GM12891	blood:	n/a	n/a
47	POLR2A	chr3:49200158-49201114	U87	brain:	n/a	n/a
48	POLR2A	chr3:49200444-49200827	HepG2	liver:	n/a	n/a
49	POLR2A	chr3:49200498-49200809	A549	lung:	n/a	n/a
50	POLR2A	chr3:49198512-49204161	GM12878	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49192110..49194166-chr3:49199747..49201408,2	MCF-7	breast:
2	chr3:49162488..49164598-chr3:49200211..49202437,2	K562	blood:
3	chr3:49195402..49201533-chr3:49207296..49212401,9	MCF-7	breast:
4	chr3:49067951..49070552-chr3:49199245..49201626,2	K562	blood:
5	chr3:49200574..49202840-chr3:49207823..49210788,2	MCF-7	breast:
6	chr3:49027656..49029383-chr3:49199961..49201942,2	MCF-7	breast:
7	chr3:49198168..49200645-chr3:49211215..49212732,2	K562	blood:
8	chr3:49057940..49060006-chr3:49197956..49200673,2	MCF-7	breast:
9	chr3:49055738..49057542-chr3:49200066..49202706,2	K562	blood:
10	chr3:49199767..49200734-chr5:43040560..43041196,2	Hela-S3	cervix:
11	chr3:49199406..49201947-chr3:49447942..49450781,2	MCF-7	breast:
12	chr3:49170619..49172882-chr3:49199915..49201887,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270441	TF binding region
ENSG00000172037	Chromatin interaction
ENSG00000207605	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000185909	Chromatin interaction
ENSG00000178467	Chromatin interaction
ENSG00000178057	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 39 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10049462	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10154895	0.97[ASN][1000 genomes]
rs10865954	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130182	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130184	0.92[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130185	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11552724	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11706052	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs11706189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11712006	0.87[ASN][1000 genomes]
rs11713297	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11715581	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11716334	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717524	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11719220	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11920267	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12487580	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12490393	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493001	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629637	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12629759	0.92[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12631989	0.96[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12636030	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637576	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13064780	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13064784	0.82[ASN][1000 genomes]
rs13068038	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs13077498	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13086240	1.00[JPT][hapmap]
rs13096406	0.89[ASN][1000 genomes]
rs13316620	0.88[CEU][hapmap]
rs2117938	0.92[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2304442	1.00[JPT][hapmap]
rs2334958	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3212	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34326553	0.87[ASN][1000 genomes]
rs34566463	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs34580506	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs34889065	0.87[ASN][1000 genomes]
rs35060561	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35174559	0.96[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35218722	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35283189	0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs35673421	0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3774800	0.96[CEU][hapmap];0.91[GIH][hapmap];0.90[TSI][hapmap]
rs4279134	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4308307	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4364202	0.80[ASN][1000 genomes]
rs4367098	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4499638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513485	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4521268	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs4536858	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955410	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955419	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955420	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955432	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4974078	1.00[CHD][hapmap]
rs4974080	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs5030795	0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs55713230	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61583136	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62262517	0.80[ASN][1000 genomes]
rs6414613	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs6446196	0.82[ASW][hapmap];0.92[CEU][hapmap];0.83[TSI][hapmap]
rs6446205	0.82[ASW][hapmap];0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs66991555	0.87[ASN][1000 genomes]
rs6768433	0.95[CEU][hapmap]
rs6770112	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6779394	0.82[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6781790	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs6784111	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790914	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794924	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6795756	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7432989	0.82[ASW][hapmap];0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs7621015	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs7626445	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs7638154	0.81[EUR][1000 genomes]
rs7645551	0.82[EUR][1000 genomes]
rs7652746	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9311439	1.00[JPT][hapmap]
rs9814987	0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9835439	0.92[ASN][1000 genomes]
rs9837237	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9837625	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9840050	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs9846123	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs9847839	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs9850917	1.00[JPT][hapmap]
rs9855123	0.92[ASN][1000 genomes]
rs9862483	0.97[ASN][1000 genomes]
rs9880088	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9880309	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9990153	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:39)

SNP	Gene	Cis/trans	Tissue	Source
rs4955418	NCKIPSD	cis	Muscle Skeletal	GTEx
rs4955418	WDR6	cis	parietal	SCAN
rs4955418	NCKIPSD	cis	cerebellum	SCAN
rs4955418	AMT	cis	Thyroid	GTEx
rs4955418	CCDC36	cis	Artery Tibial	GTEx
rs4955418	P4HTM	cis	parietal	SCAN
rs4955418	AMT	cis	parietal	SCAN
rs4955418	TLR9	cis	parietal	SCAN
rs4955418	WDR6	cis	lung	GTEx
rs4955418	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs4955418	WDR6	cis	Muscle Skeletal	GTEx
rs4955418	AMT	cis	Whole Blood	GTEx
rs4955418	NCKIPSD	cis	Esophagus Mucosa	GTEx
rs4955418	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs4955418	SEMA3G	cis	cerebellum	SCAN
rs4955418	WDR6	cis	Heart Left Ventricle	GTEx
rs4955418	WDR6	cis	Esophagus Mucosa	GTEx
rs4955418	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs4955418	AMT	cis	Artery Aorta	GTEx
rs4955418	NICN1	cis	Thyroid	GTEx
rs4955418	DALRD3	cis	cerebellum	SCAN
rs4955418	CCDC36	cis	Esophagus Muscularis	GTEx
rs4955418	WDR6	cis	Esophagus Muscularis	GTEx
rs4955418	WDR6	cis	Nerve Tibial	GTEx
rs4955418	ARIH2	cis	Thyroid	GTEx
rs4955418	AMT	cis	cerebellum	SCAN
rs4955418	WDR6	cis	cerebellum	SCAN
rs4955418	CCDC71	cis	cerebellum	SCAN
rs4955418	WDR6	cis	lymphoblastoid	seeQTL
rs4955418	WDR6	cis	Whole Blood	GTEx
rs4955418	ZNF589	cis	parietal	SCAN
rs4955418	AMT	cis	Muscle Skeletal	GTEx
rs4955418	P4HTM	cis	cerebellum	SCAN
rs4955418	NCKIPSD	cis	parietal	SCAN
rs4955418	CXorf38	trans	parietal	SCAN
rs4955418	NICN1-AS1	cis	Thyroid	GTEx
rs4955418	C3orf62	cis	cerebellum	SCAN
rs4955418	WDR6	cis	Adipose Subcutaneous	GTEx
rs4955418	WDR6	cis	Artery Tibial	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49195200-49202400	Weak transcription	Fetal Kidney	kidney
2	chr3:49195600-49202200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:49196000-49202400	Strong transcription	Fetal Stomach	stomach
4	chr3:49196400-49202200	Weak transcription	Right Atrium	heart
5	chr3:49196600-49200800	Weak transcription	Hela-S3	cervix
6	chr3:49197400-49201000	Weak transcription	K562	blood
7	chr3:49198000-49201800	Strong transcription	Thymus	Thymus
8	chr3:49198000-49202200	Weak transcription	Small Intestine	intestine
9	chr3:49198000-49202400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:49198200-49201600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:49198200-49201600	Strong transcription	Aorta	Aorta
12	chr3:49198200-49201600	Strong transcription	Brain Germinal Matrix	brain
13	chr3:49198200-49202000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:49198200-49202000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr3:49198200-49202200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:49198200-49202200	Strong transcription	Fetal Brain Female	brain
17	chr3:49198200-49202400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:49198600-49201800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:49198600-49201800	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:49198600-49202000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:49198800-49201400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:49198800-49201400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:49198800-49201400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr3:49198800-49201800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:49198800-49201800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:49198800-49201800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr3:49198800-49201800	Strong transcription	Fetal Intestine Large	intestine
28	chr3:49198800-49202000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:49198800-49202000	Strong transcription	NHLF	lung
30	chr3:49198800-49202200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:49198800-49202200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:49198800-49202200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:49198800-49202200	Genic enhancers	Brain Hippocampus Middle	brain
34	chr3:49198800-49202400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:49198800-49202400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:49198800-49202400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:49198800-49202400	Strong transcription	NHEK	skin
38	chr3:49198800-49202600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:49199000-49200800	Genic enhancers	Primary monocytes fromperipheralblood	blood
40	chr3:49199000-49200800	Genic enhancers	Fetal Thymus	thymus
41	chr3:49199000-49201800	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr3:49199000-49202000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:49199000-49202000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr3:49199000-49202200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:49199000-49202200	Genic enhancers	Monocytes-CD14+_RO01746	blood
46	chr3:49199000-49202400	Weak transcription	Stomach Mucosa	stomach
47	chr3:49199200-49201600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:49199200-49201800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:49199200-49201800	Strong transcription	Lung	lung
50	chr3:49199200-49202000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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