Variant report

Variant	rs9840050
Chromosome Location	chr3:49133310-49133311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49132814-49133476	K562	blood:	n/a	n/a
2	POLR2A	chr3:49132925-49133666	GM12892	blood:	n/a	n/a
3	POLR2A	chr3:49130077-49133607	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:49132794-49133461	K562	blood:	n/a	n/a
5	POLR2A	chr3:49132956-49133490	GM12891	blood:	n/a	n/a
6	POLR2A	chr3:49132998-49133639	GM12892	blood:	n/a	n/a
7	POLR2A	chr3:49132838-49133848	PFSK-1	brain:	n/a	n/a

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49131901..49134800-chr6:27804680..27807035,2	K562	blood:
2	chr3:49131855..49133728-chr3:49150296..49151812,2	K562	blood:
3	chr3:49083838..49085438-chr3:49131766..49133657,2	K562	blood:
4	chr3:49128910..49133326-chr3:49168969..49172072,7	MCF-7	breast:
5	chr3:49128213..49133667-chr3:49140039..49144982,11	MCF-7	breast:
6	chr3:49128926..49138937-chr3:49145476..49160975,31	K562	blood:
7	chr3:49043476..49046691-chr3:49130841..49133756,3	K562	blood:
8	chr3:49130978..49133613-chr3:49137310..49139197,3	MCF-7	breast:
9	chr3:49130002..49134881-chr3:49145556..49149434,6	K562	blood:
10	chr3:49130342..49133374-chr3:49140037..49144249,8	K562	blood:
11	chr3:49050440..49054790-chr3:49130798..49133846,4	MCF-7	breast:
12	chr3:49129847..49133782-chr3:49155056..49162049,12	MCF-7	breast:
13	chr3:49055445..49060745-chr3:49128874..49135153,17	MCF-7	breast:
14	chr3:49130473..49134563-chr3:49139987..49143694,13	MCF-7	breast:
15	chr3:49052218..49068794-chr3:49126865..49133927,44	K562	blood:
16	chr3:49131736..49133437-chr3:49134322..49137083,2	MCF-7	breast:
17	chr3:49065295..49067964-chr3:49130021..49133372,4	MCF-7	breast:
18	chr3:49054288..49061452-chr3:49128946..49133927,24	K562	blood:
19	chr3:49130019..49133719-chr3:49139545..49142279,6	K562	blood:
20	chr3:49056708..49059801-chr3:49129963..49133658,5	MCF-7	breast:
21	chr3:49131330..49133492-chr3:49146918..49149870,2	MCF-7	breast:

No data

Variant related genes	Relation type
QRICH1	TF binding region
ENSG00000207605	Chromatin interaction
ENSG00000199032	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000172046	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000198218	Chromatin interaction
ENSG00000172037	Chromatin interaction
ENSG00000172053	Chromatin interaction
ENSG00000272434	Chromatin interaction
ENSG00000178252	Chromatin interaction
ENSG00000178035	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000233822	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 38 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10154895	0.85[ASN][1000 genomes]
rs10865954	0.82[CHB][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap];0.90[ASN][1000 genomes]
rs11130182	0.83[ASN][1000 genomes]
rs11130184	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs1134591	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11552724	0.95[ASN][1000 genomes]
rs11705737	0.83[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs11706189	0.85[ASN][1000 genomes]
rs11712006	0.95[ASN][1000 genomes]
rs11713297	1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs11715581	0.84[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs11716334	0.87[ASN][1000 genomes]
rs11719220	1.00[CHD][hapmap]
rs11920267	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs11920534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12487580	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12490393	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs12491743	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12493001	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12629759	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs12631989	0.88[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[TSI][hapmap]
rs12636030	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12637037	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12637576	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[TSI][hapmap]
rs13064784	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064883	0.82[EUR][1000 genomes]
rs13064911	0.83[EUR][1000 genomes]
rs13068038	1.00[CHD][hapmap]
rs13072554	0.82[ASN][1000 genomes]
rs13072911	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13076394	0.83[EUR][1000 genomes]
rs13077498	0.85[CHD][hapmap]
rs13080725	0.82[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap]
rs13092715	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2117938	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[TSI][hapmap]
rs2304442	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs3212	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34326553	0.95[ASN][1000 genomes]
rs34566463	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs34580506	0.87[CHD][hapmap];0.95[ASN][1000 genomes]
rs34889065	0.95[ASN][1000 genomes]
rs35060561	1.00[CHD][hapmap]
rs35108630	0.82[ASN][1000 genomes]
rs35174559	0.88[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[TSI][hapmap]
rs35283189	1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs35673421	1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs36133651	0.84[EUR][1000 genomes]
rs3923475	0.82[ASN][1000 genomes]
rs4072859	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4279134	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292260	0.86[YRI][hapmap]
rs4308307	0.87[ASN][1000 genomes]
rs4364202	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4499638	0.82[ASN][1000 genomes]
rs4513485	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521268	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536858	0.82[ASN][1000 genomes]
rs4955410	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4955411	0.86[YRI][hapmap]
rs4955416	0.86[YRI][hapmap]
rs4955418	0.92[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs4955419	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs4955420	0.82[CHB][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs4955432	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs4974085	0.81[AMR][1000 genomes]
rs4974091	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5030795	1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs55713230	0.82[ASN][1000 genomes]
rs61583136	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62262517	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.81[LWK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6446198	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.81[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66991555	0.90[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6770112	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6772452	0.89[ASW][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap]
rs6779394	0.96[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6784111	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6786665	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6789285	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6790914	0.82[ASN][1000 genomes]
rs6791234	0.83[EUR][1000 genomes]
rs6795025	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7373072	0.81[YRI][hapmap]
rs7373790	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs7432989	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7612459	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7615235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7617480	0.86[YRI][hapmap]
rs7621015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7626445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.81[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7632267	0.82[EUR][1000 genomes]
rs7636057	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7639332	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7643368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs7645551	0.86[EUR][1000 genomes]
rs7652746	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs8926	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9311439	0.82[CHB][hapmap]
rs9586	0.82[YRI][hapmap]
rs9637481	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs9683094	0.80[AMR][1000 genomes]
rs9814987	0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[ASN][1000 genomes]
rs9831648	0.86[YRI][hapmap]
rs9835439	0.85[ASN][1000 genomes]
rs9837237	1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs9837625	1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs9846123	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9847839	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs9850134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9855123	0.85[ASN][1000 genomes]
rs9862483	0.85[ASN][1000 genomes]
rs9867373	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9880088	1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9990153	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv876765	chr3:49119063-49160671	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:38)

SNP	Gene	Cis/trans	Tissue	Source
rs9840050	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs9840050	WDR6	cis	Nerve Tibial	GTEx
rs9840050	DALRD3	cis	cerebellum	SCAN
rs9840050	CCDC71	cis	cerebellum	SCAN
rs9840050	AMT	cis	parietal	SCAN
rs9840050	NICN1	cis	Thyroid	GTEx
rs9840050	NCKIPSD	cis	Muscle Skeletal	GTEx
rs9840050	AMT	cis	Muscle Skeletal	GTEx
rs9840050	WDR6	cis	uninvolved skin	skin_eQTL
rs9840050	WDR6	cis	Muscle Skeletal	GTEx
rs9840050	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs9840050	P4HTM	cis	parietal	SCAN
rs9840050	WDR6	cis	lung	GTEx
rs9840050	PHF7	cis	parietal	SCAN
rs9840050	CCDC36	cis	Esophagus Muscularis	GTEx
rs9840050	TLR9	cis	parietal	SCAN
rs9840050	WDR6	cis	Esophagus Mucosa	GTEx
rs9840050	NICN1-AS1	cis	Thyroid	GTEx
rs9840050	NCKIPSD	cis	Whole Blood	GTEx
rs9840050	AMT	cis	cerebellum	SCAN
rs9840050	WDR6	cis	parietal	SCAN
rs9840050	WDR6	cis	Heart Left Ventricle	GTEx
rs9840050	WDR6	cis	Whole Blood	GTEx
rs9840050	WDR6	cis	Adipose Subcutaneous	GTEx
rs9840050	WDR6	cis	Stomach	GTEx
rs9840050	CCDC36	cis	Artery Tibial	GTEx
rs9840050	WDR6	cis	cerebellum	SCAN
rs9840050	P4HTM	cis	cerebellum	SCAN
rs9840050	DALRD3	cis	parietal	SCAN
rs9840050	NCKIPSD	cis	parietal	SCAN
rs9840050	WDR6	cis	Esophagus Muscularis	GTEx
rs9840050	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs9840050	WDR6	cis	Artery Tibial	GTEx
rs9840050	NCKIPSD	cis	cerebellum	SCAN
rs9840050	AMT	cis	Thyroid	GTEx
rs9840050	NCKIPSD	cis	Nerve Tibial	GTEx
rs9840050	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs9840050	WDR6	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49132000-49133600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:49132200-49133400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:49132400-49133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:49132400-49133400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:49132400-49133400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:49132400-49134400	Weak transcription	Thymus	Thymus
7	chr3:49132400-49134600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:49132400-49134600	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:49132400-49134600	Weak transcription	NH-A	brain
10	chr3:49132400-49134800	Weak transcription	Psoas Muscle	Psoas
11	chr3:49132400-49135000	Weak transcription	Fetal Brain Female	brain
12	chr3:49132400-49135200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:49132400-49135200	Weak transcription	Colonic Mucosa	Colon
14	chr3:49132400-49135200	Weak transcription	Gastric	stomach
15	chr3:49132400-49135200	Weak transcription	Ovary	ovary
16	chr3:49132400-49135200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:49132400-49135200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:49132400-49135200	Weak transcription	Small Intestine	intestine
19	chr3:49132400-49135200	Weak transcription	A549	lung
20	chr3:49132400-49135200	Weak transcription	HSMM	muscle
21	chr3:49132400-49135400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:49132400-49135400	Weak transcription	Primary T cells from cord blood	blood
23	chr3:49132400-49135400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:49132400-49135400	Weak transcription	Aorta	Aorta
25	chr3:49132400-49135400	Weak transcription	Brain Substantia Nigra	brain
26	chr3:49132400-49135400	Weak transcription	Fetal Kidney	kidney
27	chr3:49132400-49135600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:49132400-49136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:49132400-49136800	Weak transcription	Fetal Brain Male	brain
30	chr3:49132400-49136800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:49132400-49140800	Weak transcription	Right Atrium	heart
32	chr3:49132400-49141600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr3:49132600-49133400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr3:49132600-49133400	Weak transcription	Left Ventricle	heart
35	chr3:49132600-49133400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:49132600-49133400	Weak transcription	HUVEC	blood vessel
37	chr3:49132600-49133400	Weak transcription	NHEK	skin
38	chr3:49132600-49133600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:49132600-49134400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr3:49132600-49134600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:49132600-49134600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:49132600-49134600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:49132600-49134600	Weak transcription	HepG2	liver
44	chr3:49132600-49135000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr3:49132600-49135000	Weak transcription	Brain Anterior Caudate	brain
46	chr3:49132600-49135200	Weak transcription	Primary B cells from cord blood	blood
47	chr3:49132600-49135200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:49132600-49135200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr3:49132600-49135200	Weak transcription	Fetal Lung	lung
50	chr3:49132600-49135200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links