Variant report

Variant	rs7643368
Chromosome Location	chr3:48992855-48992856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48953421..48955024-chr3:48992641..48995002,2	K562	blood:

Extended variants
information (count: 126 )
Associated
traits (count: 38 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10780033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130176	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134591	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11552724	1.00[JPT][hapmap]
rs11705737	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11705888	0.84[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11708022	0.85[ASN][1000 genomes]
rs11709246	0.95[ASN][1000 genomes]
rs11712982	0.92[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11717978	0.95[ASN][1000 genomes]
rs11719457	0.95[ASN][1000 genomes]
rs11920534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12491743	0.85[EUR][1000 genomes]
rs12493001	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12637037	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13064784	0.83[EUR][1000 genomes]
rs13064883	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13064911	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13072911	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13073997	0.90[ASN][1000 genomes]
rs13076394	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13078308	0.85[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13090839	0.92[ASN][1000 genomes]
rs13092715	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13094900	0.87[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28642807	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3212	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.95[ASN][1000 genomes]
rs34504524	0.87[ASN][1000 genomes]
rs34509487	0.95[ASN][1000 genomes]
rs34580506	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35283189	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs35673421	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3774628	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs4072859	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279134	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs4292260	0.82[YRI][hapmap]
rs4513485	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs4521268	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs4955410	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs4955411	0.82[YRI][hapmap]
rs4955416	0.82[YRI][hapmap]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap];0.93[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974084	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974085	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974091	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5030795	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs55674449	0.88[ASN][1000 genomes]
rs56318350	0.95[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6442130	0.81[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446198	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67060340	0.90[ASN][1000 genomes]
rs67332931	0.95[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6772452	0.89[ASW][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap]
rs6779394	0.96[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap]
rs6781790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6784111	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6786665	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789285	0.93[EUR][1000 genomes]
rs6791234	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6795025	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71324924	0.95[ASN][1000 genomes]
rs7372149	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7373778	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7373790	0.91[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7430501	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431857	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432989	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs7612459	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7615235	0.89[EUR][1000 genomes]
rs7615675	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7616815	0.81[EUR][1000 genomes]
rs7621015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636057	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639332	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7647093	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7647813	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs7649458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8926	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9284885	0.82[YRI][hapmap]
rs9311430	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9311433	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9681717	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9754878	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9830636	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840050	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs9840684	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9841640	0.80[EUR][1000 genomes]
rs9846123	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9850134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9867373	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879971	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9880088	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:38)

SNP	Gene	Cis/trans	Tissue	Source
rs7643368	DALRD3	cis	cerebellum	SCAN
rs7643368	AMT	cis	Muscle Skeletal	GTEx
rs7643368	NCKIPSD	cis	Whole Blood	GTEx
rs7643368	DALRD3	cis	parietal	SCAN
rs7643368	AMT	cis	Thyroid	GTEx
rs7643368	WDR6	cis	Nerve Tibial	GTEx
rs7643368	AMT	cis	parietal	SCAN
rs7643368	NICN1-AS1	cis	Thyroid	GTEx
rs7643368	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs7643368	PHF7	cis	parietal	SCAN
rs7643368	WDR6	cis	lung	GTEx
rs7643368	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs7643368	WDR6	cis	Esophagus Muscularis	GTEx
rs7643368	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs7643368	NCKIPSD	cis	Muscle Skeletal	GTEx
rs7643368	WDR6	cis	Whole Blood	GTEx
rs7643368	AMT	cis	cerebellum	SCAN
rs7643368	WDR6	cis	lymphoblastoid	seeQTL
rs7643368	WDR6	cis	Muscle Skeletal	GTEx
rs7643368	TLR9	cis	parietal	SCAN
rs7643368	CCDC36	cis	Esophagus Muscularis	GTEx
rs7643368	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs7643368	CCDC71	cis	cerebellum	SCAN
rs7643368	NCKIPSD	cis	Nerve Tibial	GTEx
rs7643368	WDR6	cis	Adipose Subcutaneous	GTEx
rs7643368	WDR6	cis	parietal	SCAN
rs7643368	CCDC36	cis	Artery Tibial	GTEx
rs7643368	NCKIPSD	cis	cerebellum	SCAN
rs7643368	P4HTM	cis	parietal	SCAN
rs7643368	P4HTM	cis	cerebellum	SCAN
rs7643368	WDR6	cis	cerebellum	SCAN
rs7643368	WDR6	cis	Stomach	GTEx
rs7643368	NCKIPSD	cis	parietal	SCAN
rs7643368	WDR6	cis	Artery Tibial	GTEx
rs7643368	NICN1	cis	Thyroid	GTEx
rs7643368	ARIH2	cis	Thyroid	GTEx
rs7643368	WDR6	cis	Heart Left Ventricle	GTEx
rs7643368	WDR6	cis	Esophagus Mucosa	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-48995400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
8	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
9	chr3:48967400-48994800	Weak transcription	Gastric	stomach
10	chr3:48968000-48997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:48968200-48997200	Weak transcription	NHDF-Ad	bronchial
12	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
13	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:48971000-48994800	Weak transcription	Spleen	Spleen
15	chr3:48971600-48993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:48972400-48995400	Weak transcription	Brain Germinal Matrix	brain
18	chr3:48972400-48995400	Weak transcription	Ovary	ovary
19	chr3:48973400-48994800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:48973600-48997600	Weak transcription	Osteobl	bone
21	chr3:48975000-48999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:48979000-49007600	Weak transcription	Stomach Mucosa	stomach
23	chr3:48981400-49002200	Weak transcription	A549	lung
24	chr3:48982800-48994800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:48982800-48995400	Weak transcription	Fetal Intestine Large	intestine
26	chr3:48982800-48999600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:48982800-49002800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr3:48983200-48995000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:48983400-48995400	Weak transcription	Fetal Lung	lung
30	chr3:48983600-48994000	Weak transcription	Fetal Brain Female	brain
31	chr3:48983800-48994400	Weak transcription	Primary B cells from cord blood	blood
32	chr3:48983800-48995400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr3:48984400-48994600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:48984400-48995400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:48984600-48998400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:48986600-49004400	Weak transcription	NHLF	lung
37	chr3:48987000-48994400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr3:48987000-48994600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:48987000-48994600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:48987000-48995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:48987000-48995400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:48987000-48997200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:48987000-48997400	Weak transcription	Psoas Muscle	Psoas
44	chr3:48987000-49004000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:48987000-49004200	Weak transcription	Aorta	Aorta
46	chr3:48987200-49000000	Weak transcription	NH-A	brain
47	chr3:48987200-49002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:48987200-49002200	Weak transcription	HMEC	breast
49	chr3:48988000-48995400	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:48988000-49000200	Weak transcription	Fetal Heart	heart

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