Variant report

Variant	rs13315711
Chromosome Location	chr3:48986399-48986400
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 24 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10780033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134591	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11552724	1.00[JPT][hapmap]
rs11705737	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11705888	0.86[EUR][1000 genomes]
rs11706052	1.00[JPT][hapmap]
rs11708022	0.85[ASN][1000 genomes]
rs11709246	0.95[ASN][1000 genomes]
rs11712982	0.92[ASN][1000 genomes]
rs11713694	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11717978	0.95[ASN][1000 genomes]
rs11719457	0.95[ASN][1000 genomes]
rs11920534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12491743	0.86[EUR][1000 genomes]
rs12493001	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12637037	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13064784	0.84[EUR][1000 genomes]
rs13064883	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13064911	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13072911	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13073997	0.90[ASN][1000 genomes]
rs13076394	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13078308	0.87[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13087930	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13090839	0.92[ASN][1000 genomes]
rs13092715	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13094900	0.87[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28642807	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3212	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs34037363	1.00[JPT][hapmap]
rs34477108	0.95[ASN][1000 genomes]
rs34504524	0.87[ASN][1000 genomes]
rs34509487	0.95[ASN][1000 genomes]
rs34580506	1.00[JPT][hapmap]
rs35283189	1.00[JPT][hapmap]
rs35673421	1.00[JPT][hapmap]
rs3774628	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4072859	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4513485	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4521268	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4955410	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4974078	0.85[CHB][hapmap];0.93[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974084	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974091	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs5030795	1.00[JPT][hapmap]
rs55674449	0.88[ASN][1000 genomes]
rs56318350	0.95[ASN][1000 genomes]
rs6414613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6442130	0.82[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446198	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67060340	0.90[ASN][1000 genomes]
rs67332931	0.95[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6772452	0.93[YRI][hapmap]
rs6779394	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6781790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6784111	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6786665	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789285	0.94[EUR][1000 genomes]
rs6791234	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6791542	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6795025	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71324924	0.95[ASN][1000 genomes]
rs7372149	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7373778	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7373790	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7430501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432989	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7612459	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7615235	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7615675	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7616815	0.82[EUR][1000 genomes]
rs7621015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636057	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639332	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647093	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7647813	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7649458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653459	0.80[EUR][1000 genomes]
rs8926	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9311430	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9311433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9681717	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9754878	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9830636	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9840684	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9841640	0.81[EUR][1000 genomes]
rs9846123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9850134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9867373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879971	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9880088	1.00[JPT][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:24)

SNP	Gene	Cis/trans	Tissue	Source
rs13315711	CCDC36	cis	Artery Tibial	GTEx
rs13315711	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs13315711	WDR6	cis	Artery Tibial	GTEx
rs13315711	NCKIPSD	cis	Whole Blood	GTEx
rs13315711	WDR6	cis	Esophagus Mucosa	GTEx
rs13315711	AMT	cis	Thyroid	GTEx
rs13315711	CCDC36	cis	Esophagus Muscularis	GTEx
rs13315711	WDR6	cis	Stomach	GTEx
rs13315711	WDR6	cis	Adipose Subcutaneous	GTEx
rs13315711	WDR6	cis	lung	GTEx
rs13315711	NICN1-AS1	cis	Thyroid	GTEx
rs13315711	WDR6	cis	Esophagus Muscularis	GTEx
rs13315711	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs13315711	NCKIPSD	cis	Muscle Skeletal	GTEx
rs13315711	WDR6	cis	Muscle Skeletal	GTEx
rs13315711	WDR6	cis	Heart Left Ventricle	GTEx
rs13315711	NICN1	cis	Thyroid	GTEx
rs13315711	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs13315711	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs13315711	WDR6	cis	Whole Blood	GTEx
rs13315711	WDR6	cis	Nerve Tibial	GTEx
rs13315711	WDR6	cis	uninvolved skin	skin_eQTL
rs13315711	AMT	cis	Muscle Skeletal	GTEx
rs13315711	NCKIPSD	cis	Nerve Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-48995400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
8	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
9	chr3:48967400-48994800	Weak transcription	Gastric	stomach
10	chr3:48968000-48997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:48968200-48997200	Weak transcription	NHDF-Ad	bronchial
12	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
13	chr3:48970600-48991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:48970800-48986600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:48970800-48991000	Weak transcription	Lung	lung
16	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:48971000-48994800	Weak transcription	Spleen	Spleen
18	chr3:48971400-48991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:48971400-48991000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:48971600-48993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr3:48972400-48991200	Weak transcription	Adipose Nuclei	Adipose
23	chr3:48972400-48995400	Weak transcription	Brain Germinal Matrix	brain
24	chr3:48972400-48995400	Weak transcription	Ovary	ovary
25	chr3:48972800-48991200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr3:48973400-48986600	Weak transcription	NH-A	brain
27	chr3:48973400-48986800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:48973400-48991400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:48973400-48994800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:48973600-48997600	Weak transcription	Osteobl	bone
31	chr3:48974600-48990400	Weak transcription	Fetal Intestine Small	intestine
32	chr3:48974800-48991400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:48975000-48991200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:48975000-48999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:48975200-48991800	Weak transcription	HUVEC	blood vessel
36	chr3:48975400-48990800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:48976000-48987000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr3:48976200-48987000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:48976400-48989800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:48979000-49007600	Weak transcription	Stomach Mucosa	stomach
41	chr3:48981400-48986400	Weak transcription	Aorta	Aorta
42	chr3:48981400-49002200	Weak transcription	A549	lung
43	chr3:48981600-48992000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:48982200-48991800	Weak transcription	HSMM	muscle
45	chr3:48982400-48986600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:48982600-48986400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:48982800-48987600	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:48982800-48990000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:48982800-48990000	Weak transcription	Fetal Thymus	thymus
50	chr3:48982800-48990600	Weak transcription	Fetal Stomach	stomach

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