Variant report

Variant	rs4974085
Chromosome Location	chr3:48924900-48924901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48924606..48926338-chr3:48931670..48934413,2	K562	blood:

Extended variants
information (count: 130 )
Associated
traits (count: 42 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10780033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130176	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1134591	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705737	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705888	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11706983	1.00[CHD][hapmap]
rs11708022	0.90[ASN][1000 genomes]
rs11708786	1.00[CHD][hapmap]
rs11709246	1.00[ASN][1000 genomes]
rs11712982	0.87[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11717978	0.90[ASN][1000 genomes]
rs11719291	1.00[CHD][hapmap]
rs11719457	0.90[ASN][1000 genomes]
rs11920534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs12491743	0.81[EUR][1000 genomes]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493578	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs12497850	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs12637037	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13064883	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13064911	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13072911	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13073997	0.95[ASN][1000 genomes]
rs13076394	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13078308	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13090839	0.87[ASN][1000 genomes]
rs13092715	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13094900	0.92[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13434258	1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs28642807	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.90[ASN][1000 genomes]
rs34504524	0.82[ASN][1000 genomes]
rs34509487	0.90[ASN][1000 genomes]
rs34580506	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35064573	1.00[CHD][hapmap]
rs35283189	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3774628	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs4072859	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858798	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs4858831	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs4955416	0.82[YRI][hapmap]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974084	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974091	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55674449	0.83[ASN][1000 genomes]
rs56318350	0.90[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6442130	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446198	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67060340	0.95[ASN][1000 genomes]
rs67332931	1.00[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6772452	0.89[ASW][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap]
rs6781790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6786665	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs6789285	0.89[EUR][1000 genomes]
rs6791234	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6791542	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs6795025	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6796790	0.82[YRI][hapmap]
rs6801211	0.82[YRI][hapmap]
rs71324924	1.00[ASN][1000 genomes]
rs7372149	0.87[EUR][1000 genomes]
rs7373778	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7373790	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7430501	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431857	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432989	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs7612459	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7615235	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7615675	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7616815	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs7621015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630742	0.82[EUR][1000 genomes]
rs7636057	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639332	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7643368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7647093	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7647813	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs7649458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653459	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8926	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9284885	0.82[YRI][hapmap]
rs9311430	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9311433	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9681717	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9754878	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9830636	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9840050	0.81[AMR][1000 genomes]
rs9840684	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846123	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9850134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867373	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879971	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882549	1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:42)

SNP	Gene	Cis/trans	Tissue	Source
rs4974085	NCKIPSD	cis	Nerve Tibial	GTEx
rs4974085	DALRD3	cis	cerebellum	SCAN
rs4974085	WDR6	cis	Adipose Subcutaneous	GTEx
rs4974085	AMT	cis	parietal	SCAN
rs4974085	AMT	cis	Thyroid	GTEx
rs4974085	ARIH2	cis	Thyroid	GTEx
rs4974085	NCKIPSD	cis	cerebellum	SCAN
rs4974085	AMT	cis	cerebellum	SCAN
rs4974085	CCDC71	cis	cerebellum	SCAN
rs4974085	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs4974085	WDR6	cis	cerebellum	SCAN
rs4974085	WDR6	cis	Artery Tibial	GTEx
rs4974085	WDR6	cis	lung	GTEx
rs4974085	NCKIPSD	cis	Muscle Skeletal	GTEx
rs4974085	WDR6	cis	multi-tissue	Pritchard
rs4974085	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs4974085	WDR6	cis	Esophagus Mucosa	GTEx
rs4974085	WDR6	cis	Liver	GTEx
rs4974085	AMT	cis	multi-tissue	Pritchard
rs4974085	WDR6	cis	uninvolved skin	skin_eQTL
rs4974085	WDR6	cis	Esophagus Muscularis	GTEx
rs4974085	WDR6	cis	Whole Blood	GTEx
rs4974085	TLR9	cis	parietal	SCAN
rs4974085	P4HTM	cis	cerebellum	SCAN
rs4974085	NCKIPSD	cis	multi-tissue	Pritchard
rs4974085	NCKIPSD	cis	parietal	SCAN
rs4974085	NCKIPSD	cis	Whole Blood	GTEx
rs4974085	DALRD3	cis	parietal	SCAN
rs4974085	WDR6	cis	Nerve Tibial	GTEx
rs4974085	P4HTM	cis	parietal	SCAN
rs4974085	WDR6	cis	Muscle Skeletal	GTEx
rs4974085	NICN1	cis	Thyroid	GTEx
rs4974085	CCDC36	cis	Artery Tibial	GTEx
rs4974085	WDR6	cis	parietal	SCAN
rs4974085	AMT	cis	Whole Blood	GTEx
rs4974085	CCDC36	cis	Esophagus Muscularis	GTEx
rs4974085	WDR6	cis	Heart Left Ventricle	GTEx
rs4974085	WDR6	cis	lymphoblastoid	seeQTL
rs4974085	NICN1-AS1	cis	Thyroid	GTEx
rs4974085	PHF7	cis	parietal	SCAN
rs4974085	AMT	cis	Muscle Skeletal	GTEx
rs4974085	NICN1	cis	multi-tissue	Pritchard

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48889600-48935400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:48896400-48934400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:48896800-48934200	Weak transcription	Stomach Mucosa	stomach
4	chr3:48896800-48935000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:48897000-48928600	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:48897000-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:48897000-48934200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:48897000-48934200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:48897200-48934200	Weak transcription	Colonic Mucosa	Colon
10	chr3:48897200-48935000	Weak transcription	NH-A	brain
11	chr3:48897200-48935200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:48897400-48934600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:48900200-48932000	Weak transcription	Dnd41	blood
14	chr3:48900200-48932800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:48900200-48935000	Weak transcription	Esophagus	oesophagus
16	chr3:48902600-48935000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:48904000-48931200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr3:48907000-48925400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr3:48911400-48926800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:48914600-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:48915400-48928800	Weak transcription	HSMM	muscle
22	chr3:48916000-48925000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:48916600-48935000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:48916800-48926600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:48917000-48934800	Weak transcription	NHDF-Ad	bronchial
26	chr3:48917600-48925200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:48917600-48926400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:48917600-48934200	Weak transcription	Osteobl	bone
29	chr3:48917600-48934800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:48917800-48928400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:48917800-48934200	Weak transcription	GM12878-XiMat	blood
32	chr3:48918200-48929600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:48918800-48925000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:48919000-48925000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:48919400-48935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:48919600-48928800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:48919600-48929000	Weak transcription	Right Ventricle	heart
38	chr3:48919600-48934400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:48919800-48928800	Weak transcription	Pancreas	Pancrea
40	chr3:48920000-48933600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr3:48920000-48934200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:48920200-48926400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:48920400-48934200	Weak transcription	Fetal Heart	heart
44	chr3:48920600-48925000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:48921600-48928800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:48921600-48935000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:48922600-48928400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:48922600-48928600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:48922600-48934400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr3:48922600-48935000	Weak transcription	Brain Angular Gyrus	brain

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