Variant report

Variant	rs7431857
Chromosome Location	chr3:48900347-48900348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48891600..48893937-chr3:48899694..48902243,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 38 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10780033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130176	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1134591	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705737	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705888	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11706983	1.00[CHD][hapmap]
rs11708022	0.90[ASN][1000 genomes]
rs11708786	1.00[CHD][hapmap]
rs11709246	1.00[ASN][1000 genomes]
rs11712982	0.87[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11717978	0.90[ASN][1000 genomes]
rs11719291	1.00[CHD][hapmap]
rs11719457	0.90[ASN][1000 genomes]
rs11920534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs12491743	0.80[EUR][1000 genomes]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493578	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs12497850	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs12637037	0.86[EUR][1000 genomes]
rs13064883	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13064911	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13072911	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13073997	0.95[ASN][1000 genomes]
rs13076394	0.94[EUR][1000 genomes]
rs13078308	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13090839	0.87[ASN][1000 genomes]
rs13092715	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13094900	0.92[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13434258	1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs28642807	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.90[ASN][1000 genomes]
rs34504524	0.82[ASN][1000 genomes]
rs34509487	0.90[ASN][1000 genomes]
rs35064573	1.00[CHD][hapmap]
rs3774628	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4072859	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858798	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs4858828	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs4858831	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974084	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974085	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974091	0.87[EUR][1000 genomes]
rs55674449	0.83[ASN][1000 genomes]
rs56318350	0.90[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6442130	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446198	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67060340	0.95[ASN][1000 genomes]
rs67332931	1.00[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6772452	0.89[ASW][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap]
rs6781790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6786665	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap]
rs6789285	0.88[EUR][1000 genomes]
rs6791234	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6791542	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs6795025	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6796790	0.82[YRI][hapmap]
rs6801211	0.82[YRI][hapmap]
rs71324924	1.00[ASN][1000 genomes]
rs7372149	0.86[EUR][1000 genomes]
rs7373778	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7373790	0.85[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7430501	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432989	0.82[EUR][1000 genomes]
rs7612459	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7615235	0.83[EUR][1000 genomes]
rs7615675	0.90[EUR][1000 genomes]
rs7616815	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs7621015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626445	0.83[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630742	0.83[EUR][1000 genomes]
rs7636057	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639332	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7643368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7647093	0.88[EUR][1000 genomes]
rs7647813	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs7649458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653459	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8926	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9284885	0.82[YRI][hapmap]
rs9311430	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9311433	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9681717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9754878	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9830636	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9840684	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846123	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9850134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867373	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882549	1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:38)

SNP	Gene	Cis/trans	Tissue	Source
rs7431857	NCKIPSD	cis	Nerve Tibial	GTEx
rs7431857	WDR6	cis	Nerve Tibial	GTEx
rs7431857	CCDC71	cis	cerebellum	SCAN
rs7431857	WDR6	cis	Muscle Skeletal	GTEx
rs7431857	WDR6	cis	cerebellum	SCAN
rs7431857	PHF7	cis	parietal	SCAN
rs7431857	DALRD3	cis	cerebellum	SCAN
rs7431857	DALRD3	cis	parietal	SCAN
rs7431857	WDR6	cis	Esophagus Mucosa	GTEx
rs7431857	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs7431857	WDR6	cis	Esophagus Muscularis	GTEx
rs7431857	WDR6	cis	Adipose Subcutaneous	GTEx
rs7431857	AMT	cis	Whole Blood	GTEx
rs7431857	NCKIPSD	cis	Whole Blood	GTEx
rs7431857	P4HTM	cis	parietal	SCAN
rs7431857	AMT	cis	parietal	SCAN
rs7431857	NICN1-AS1	cis	Thyroid	GTEx
rs7431857	WDR6	cis	lung	GTEx
rs7431857	WDR6	cis	parietal	SCAN
rs7431857	NCKIPSD	cis	cerebellum	SCAN
rs7431857	WDR6	cis	Heart Left Ventricle	GTEx
rs7431857	WDR6	cis	lymphoblastoid	seeQTL
rs7431857	NICN1	cis	Thyroid	GTEx
rs7431857	CCDC36	cis	Esophagus Muscularis	GTEx
rs7431857	AMT	cis	Muscle Skeletal	GTEx
rs7431857	CCDC36	cis	Artery Tibial	GTEx
rs7431857	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs7431857	P4HTM	cis	cerebellum	SCAN
rs7431857	NCKIPSD	cis	Muscle Skeletal	GTEx
rs7431857	NCKIPSD	cis	parietal	SCAN
rs7431857	AMT	cis	Thyroid	GTEx
rs7431857	WDR6	cis	Whole Blood	GTEx
rs7431857	WDR6	cis	Artery Tibial	GTEx
rs7431857	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs7431857	TLR9	cis	parietal	SCAN
rs7431857	AMT	cis	cerebellum	SCAN
rs7431857	ARIH2	cis	Thyroid	GTEx
rs7431857	NCKIPSD	cis	Esophagus Muscularis	GTEx

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48885600-48915000	Weak transcription	Small Intestine	intestine
2	chr3:48885800-48900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:48885800-48906600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:48885800-48913600	Weak transcription	Fetal Lung	lung
5	chr3:48886200-48900400	Weak transcription	NHLF	lung
6	chr3:48886200-48900800	Weak transcription	NHDF-Ad	bronchial
7	chr3:48886600-48901800	Weak transcription	Fetal Heart	heart
8	chr3:48889200-48902000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:48889400-48901200	Weak transcription	Fetal Brain Male	brain
10	chr3:48889600-48935400	Weak transcription	Brain Germinal Matrix	brain
11	chr3:48889800-48916800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:48891600-48904600	Weak transcription	HSMM	muscle
13	chr3:48893200-48900400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:48893200-48900600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr3:48893800-48900600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:48894200-48900400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr3:48894400-48902200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:48894400-48923000	Strong transcription	Fetal Intestine Small	intestine
19	chr3:48894600-48918800	Weak transcription	HepG2	liver
20	chr3:48895800-48900800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:48896400-48934400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:48896600-48918600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:48896800-48934200	Weak transcription	Stomach Mucosa	stomach
24	chr3:48896800-48935000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:48897000-48900800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:48897000-48911800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:48897000-48916600	Weak transcription	GM12878-XiMat	blood
28	chr3:48897000-48918400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:48897000-48918800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:48897000-48921400	Weak transcription	Primary B cells from cord blood	blood
31	chr3:48897000-48928600	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:48897000-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:48897000-48934200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:48897000-48934200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:48897200-48900400	Weak transcription	K562	blood
36	chr3:48897200-48902000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:48897200-48902000	Weak transcription	Fetal Brain Female	brain
38	chr3:48897200-48907000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:48897200-48916600	Weak transcription	Aorta	Aorta
40	chr3:48897200-48918400	Weak transcription	Gastric	stomach
41	chr3:48897200-48918800	Weak transcription	Ovary	ovary
42	chr3:48897200-48918800	Weak transcription	Psoas Muscle	Psoas
43	chr3:48897200-48923200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:48897200-48924400	Weak transcription	HSMMtube	muscle
45	chr3:48897200-48934200	Weak transcription	Colonic Mucosa	Colon
46	chr3:48897200-48935000	Weak transcription	NH-A	brain
47	chr3:48897200-48935200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:48897400-48918800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr3:48897400-48921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:48897400-48934600	Weak transcription	Brain Anterior Caudate	brain

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