Variant report

Variant	rs6442130
Chromosome Location	chr3:48778027-48778028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr3:48777361-48778102	HepG2	liver:	n/a	n/a
2	FOXA2	chr3:48777571-48778091	HepG2	liver:	n/a	n/a
3	POLR2A	chr3:48777265-48778070	HepG2	liver:	n/a	n/a
4	HDAC2	chr3:48777347-48778126	HepG2	liver:	n/a	chr3:48777778-48777787
5	NFIC	chr3:48777371-48778085	HepG2	liver:	n/a	chr3:48777639-48777655 chr3:48777972-48777988 chr3:48777638-48777655
6	HNF4G	chr3:48777417-48778129	HepG2	liver:	n/a	chr3:48777923-48777935 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777922-48777937 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777923-48777937 chr3:48777923-48777937 chr3:48777921-48777939 chr3:48777919-48777941 chr3:48777923-48777937 chr3:48777923-48777936 chr3:48777924-48777937
7	HNF4A	chr3:48777478-48778135	HepG2	liver:	n/a	chr3:48777923-48777935 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777922-48777937 chr3:48777922-48777937 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777923-48777937 chr3:48777923-48777937 chr3:48777921-48777939 chr3:48777919-48777941 chr3:48777923-48777937 chr3:48777923-48777936 chr3:48777924-48777937
8	CTCF	chr3:48778011-48778051	GM12878	blood:	n/a	n/a
9	HNF4A	chr3:48777392-48778129	HepG2	liver:	n/a	chr3:48777923-48777935 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777922-48777937 chr3:48777922-48777937 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777923-48777937 chr3:48777923-48777937 chr3:48777921-48777939 chr3:48777919-48777941 chr3:48777923-48777937 chr3:48777923-48777936 chr3:48777924-48777937
10	RAD21	chr3:48776897-48778274	SK-N-SH	brain:	n/a	chr3:48777533-48777546 chr3:48778161-48778174 chr3:48777530-48777549 chr3:48777534-48777548
11	SMC3	chr3:48776905-48778266	SK-N-SH	brain:	n/a	chr3:48777534-48777548 chr3:48777534-48777544 chr3:48778098-48778106
12	SP1	chr3:48777377-48778146	A549	lung:	n/a	n/a
13	MYBL2	chr3:48776907-48778060	HepG2	liver:	n/a	n/a
14	MXI1	chr3:48776975-48778426	SK-N-SH	brain:	n/a	n/a
15	CTCF	chr3:48777940-48778090	NHDF-neo	bronchial:	n/a	n/a
16	CTCF	chr3:48777920-48778070	GM12875	blood:	n/a	n/a
17	WRNIP1	chr3:48777911-48778097	GM12878	blood:	n/a	n/a
18	NFIC	chr3:48777246-48778209	ECC-1	luminal epithelium:	n/a	chr3:48777639-48777655 chr3:48777972-48777988 chr3:48777638-48777655
19	CTCF	chr3:48777940-48778090	GM12873	blood:	n/a	n/a
20	MYBL2	chr3:48777299-48778082	HepG2	liver:	n/a	n/a
21	SMC3	chr3:48777376-48778027	HepG2	liver:	n/a	chr3:48777534-48777548 chr3:48777534-48777544
22	SP1	chr3:48777380-48778175	HepG2	liver:	n/a	n/a
23	HEY1	chr3:48777231-48778109	HepG2	liver:	n/a	n/a
24	ELF1	chr3:48777436-48778061	HepG2	liver:	n/a	chr3:48777532-48777544
25	TCF12	chr3:48777278-48778073	A549	lung:	n/a	n/a
26	FOXA1	chr3:48777659-48778198	HepG2	liver:	n/a	chr3:48777911-48777926
27	CTCF	chr3:48777960-48778110	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr3:48776937-48778511	HepG2	liver:	n/a	n/a
29	EP300	chr3:48777416-48778102	K562	blood:	n/a	chr3:48777799-48777813 chr3:48777858-48777871
30	TBP	chr3:48777156-48778113	HepG2	liver:	n/a	n/a
31	CTCF	chr3:48777900-48778050	HVMF	connective:	n/a	n/a
32	CTCF	chr3:48777900-48778050	HFF	foreskin:	n/a	n/a
33	HNF4A	chr3:48777750-48778092	HepG2	liver:	n/a	chr3:48777923-48777935 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777922-48777937 chr3:48777922-48777937 chr3:48777924-48777936 chr3:48777924-48777936 chr3:48777923-48777937 chr3:48777923-48777937 chr3:48777921-48777939 chr3:48777919-48777941 chr3:48777923-48777937 chr3:48777923-48777936 chr3:48777924-48777937
34	MBD4	chr3:48777449-48778061	HepG2	liver:	n/a	n/a
35	POLR2A	chr3:48777256-48778144	HepG2	liver:	n/a	n/a
36	MAX	chr3:48777036-48778237	HepG2	liver:	n/a	n/a
37	BHLHE40	chr3:48777369-48778071	HepG2	liver:	n/a	chr3:48777530-48777546
38	ELF1	chr3:48777665-48778028	K562	blood:	n/a	n/a
39	MXI1	chr3:48777317-48778058	HepG2	liver:	n/a	n/a
40	NFIC	chr3:48777355-48778124	HepG2	liver:	n/a	chr3:48777639-48777655 chr3:48777972-48777988 chr3:48777638-48777655
41	CTCF	chr3:48776960-48778241	SK-N-SH	brain:	n/a	chr3:48777532-48777550 chr3:48777538-48777547 chr3:48777534-48777547
42	CTCF	chr3:48777920-48778070	GM12868	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:48777662..48781214-chr3:48954479..48957215,3	K562	blood:
2	chr3:48777794..48779364-chr3:49056466..49058458,2	K562	blood:
3	chr3:48777544..48781186-chr3:48954650..48958375,5	K562	blood:
4	chr3:48754698..48757669-chr3:48775875..48778896,4	K562	blood:

Variant related genes	Relation type
IP6K2	TF binding region
ENSG00000221883	Chromatin interaction
ENSG00000068745	Chromatin interaction
ENSG00000177479	Chromatin interaction
ENSG00000199032	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000207605	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 41 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10780033	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10865952	0.83[EUR][1000 genomes]
rs11130176	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1134591	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs11705737	0.81[EUR][1000 genomes]
rs11705888	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11706983	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11708786	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11713694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11715689	0.90[ASN][1000 genomes]
rs11715713	0.95[ASN][1000 genomes]
rs11715835	0.95[ASN][1000 genomes]
rs11719291	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11920534	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12493578	0.92[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs12497850	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs13064911	0.81[EUR][1000 genomes]
rs13074318	1.00[CHB][hapmap]
rs13076394	0.81[EUR][1000 genomes]
rs13078308	0.80[EUR][1000 genomes]
rs13084000	0.95[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13092715	0.82[ASW][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs13315711	0.82[EUR][1000 genomes]
rs13434258	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17080319	1.00[CHB][hapmap]
rs28642807	0.85[EUR][1000 genomes]
rs34037363	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs35064573	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3774628	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4072859	0.81[EUR][1000 genomes]
rs4858798	0.92[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs4858828	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs4858831	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs4974079	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4974080	0.81[EUR][1000 genomes]
rs4974082	0.82[EUR][1000 genomes]
rs4974085	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs4974087	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6414613	0.80[EUR][1000 genomes]
rs6442131	0.83[AFR][1000 genomes]
rs6446196	0.82[EUR][1000 genomes]
rs6446198	0.80[EUR][1000 genomes]
rs6446205	0.81[EUR][1000 genomes]
rs6446252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes]
rs6781790	0.81[EUR][1000 genomes]
rs6786665	0.81[EUR][1000 genomes]
rs6788650	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs6791234	0.80[EUR][1000 genomes]
rs6791542	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6796790	0.82[ASW][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs6801211	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs7373072	0.88[YRI][hapmap]
rs7373778	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7430501	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs7431857	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7612459	0.81[EUR][1000 genomes]
rs7616815	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs7627404	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7628719	0.82[EUR][1000 genomes]
rs7630742	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7636057	0.82[EUR][1000 genomes]
rs7639332	0.84[EUR][1000 genomes]
rs7643368	0.81[EUR][1000 genomes]
rs7647813	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs7649458	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7653459	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9284885	0.93[YRI][hapmap]
rs9311430	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9311433	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9681717	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9682444	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9754878	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9755490	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9811027	1.00[CHB][hapmap]
rs9830636	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9834996	1.00[CHB][hapmap]
rs9835307	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9840684	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9850134	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs9867373	0.80[EUR][1000 genomes]
rs9876848	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9879971	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9882549	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590247	chr3:48661985-48801929	Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv3407876	chr3:48774454-48823998	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:41)

SNP	Gene	Cis/trans	Tissue	Source
rs6442130	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs6442130	WDR6	cis	uninvolved skin	skin_eQTL
rs6442130	NCKIPSD	cis	Nerve Tibial	GTEx
rs6442130	NCKIPSD	cis	Whole Blood	GTEx
rs6442130	DALRD3	cis	cerebellum	SCAN
rs6442130	DALRD3	cis	parietal	SCAN
rs6442130	NICN1-AS1	cis	Thyroid	GTEx
rs6442130	WDR6	cis	Adipose Subcutaneous	GTEx
rs6442130	AMT	cis	Whole Blood	GTEx
rs6442130	CCDC36	cis	Esophagus Muscularis	GTEx
rs6442130	NCKIPSD	cis	cerebellum	SCAN
rs6442130	CCDC71	cis	cerebellum	SCAN
rs6442130	TLR9	cis	parietal	SCAN
rs6442130	AMT	cis	parietal	SCAN
rs6442130	WDR6	cis	cerebellum	SCAN
rs6442130	WDR6	cis	multi-tissue	Pritchard
rs6442130	WDR6	cis	parietal	SCAN
rs6442130	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs6442130	AMT	cis	Thyroid	GTEx
rs6442130	NICN1	cis	Thyroid	GTEx
rs6442130	NCKIPSD	cis	multi-tissue	Pritchard
rs6442130	NICN1	cis	multi-tissue	Pritchard
rs6442130	NCKIPSD	cis	parietal	SCAN
rs6442130	P4HTM	cis	cerebellum	SCAN
rs6442130	WDR6	cis	lung	GTEx
rs6442130	WDR6	cis	Esophagus Muscularis	GTEx
rs6442130	WDR6	cis	Artery Tibial	GTEx
rs6442130	WDR6	cis	Esophagus Mucosa	GTEx
rs6442130	WDR6	cis	Whole Blood	GTEx
rs6442130	AMT	cis	cerebellum	SCAN
rs6442130	PHF7	cis	parietal	SCAN
rs6442130	AMT	cis	multi-tissue	Pritchard
rs6442130	ARIH2	cis	Thyroid	GTEx
rs6442130	WDR6	cis	lymphoblastoid	seeQTL
rs6442130	WDR6	cis	Nerve Tibial	GTEx
rs6442130	NCKIPSD	cis	Muscle Skeletal	GTEx
rs6442130	P4HTM	cis	parietal	SCAN
rs6442130	WDR6	cis	Heart Left Ventricle	GTEx
rs6442130	AMT	cis	Muscle Skeletal	GTEx
rs6442130	CCDC36	cis	Artery Tibial	GTEx
rs6442130	WDR6	cis	Muscle Skeletal	GTEx

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48772800-48780200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:48775000-48778200	Enhancers	Fetal Intestine Small	intestine
3	chr3:48775000-48778200	Enhancers	Fetal Kidney	kidney
4	chr3:48775000-48778400	Enhancers	Right Ventricle	heart
5	chr3:48775600-48780000	Enhancers	Placenta	Placenta
6	chr3:48775800-48778200	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr3:48775800-48778400	Enhancers	Ovary	ovary
8	chr3:48776000-48778200	Enhancers	Lung	lung
9	chr3:48776000-48778200	Enhancers	HMEC	breast
10	chr3:48776000-48778400	Enhancers	Gastric	stomach
11	chr3:48776000-48779000	Enhancers	Esophagus	oesophagus
12	chr3:48776000-48779600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:48776200-48778200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:48776200-48778200	Enhancers	Fetal Heart	heart
15	chr3:48776200-48778400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:48776200-48778600	Enhancers	Small Intestine	intestine
17	chr3:48776200-48783200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:48776200-48784800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:48776400-48778200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:48776400-48778200	Flanking Active TSS	HepG2	liver
21	chr3:48776400-48779000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:48776400-48779000	Enhancers	Fetal Muscle Leg	muscle
23	chr3:48776800-48778200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr3:48777000-48778200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:48777000-48778200	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr3:48777000-48778200	Flanking Active TSS	Colonic Mucosa	Colon
27	chr3:48777000-48778200	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr3:48777000-48778200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr3:48777000-48778200	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr3:48777000-48778200	Enhancers	NHLF	lung
31	chr3:48777000-48778400	Enhancers	Fetal Brain Female	brain
32	chr3:48777000-48778400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr3:48777000-48778400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr3:48777000-48778400	Enhancers	HSMMtube	muscle
35	chr3:48777200-48778200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:48777200-48778200	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr3:48777200-48778200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr3:48777200-48778200	Enhancers	Psoas Muscle	Psoas
39	chr3:48777200-48778400	Flanking Active TSS	Stomach Mucosa	stomach
40	chr3:48777400-48778200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:48777400-48778200	Enhancers	Fetal Brain Male	brain
42	chr3:48777400-48778400	Enhancers	Right Atrium	heart
43	chr3:48777400-48782600	Weak transcription	Aorta	Aorta
44	chr3:48777600-48778200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:48777600-48778200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:48777600-48778200	Enhancers	Brain Germinal Matrix	brain
47	chr3:48777600-48778200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr3:48777600-48778200	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr3:48777600-48778200	Flanking Active TSS	Fetal Lung	lung
50	chr3:48777600-48778200	Flanking Active TSS	Rectal Smooth Muscle	rectum

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