Variant report

Variant	rs4974087
Chromosome Location	chr3:48919232-48919233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 39 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10780033	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130176	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1134591	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705737	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705888	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11706052	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11706983	1.00[CHD][hapmap]
rs11708022	0.90[ASN][1000 genomes]
rs11708786	1.00[CHD][hapmap]
rs11709246	1.00[ASN][1000 genomes]
rs11712982	0.87[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11717978	0.90[ASN][1000 genomes]
rs11719291	1.00[CHD][hapmap]
rs11719457	0.90[ASN][1000 genomes]
rs11920534	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs12491743	0.81[EUR][1000 genomes]
rs12493289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493578	0.92[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs12497850	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs12637037	0.88[EUR][1000 genomes]
rs13064883	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13064911	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13072911	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13073997	0.95[ASN][1000 genomes]
rs13076394	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13078308	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13086240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13087930	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13090839	0.87[ASN][1000 genomes]
rs13092715	0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs13094900	0.92[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13434258	1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs28642807	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.90[ASN][1000 genomes]
rs34504524	0.82[ASN][1000 genomes]
rs34509487	0.90[ASN][1000 genomes]
rs34580506	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35064573	1.00[CHD][hapmap]
rs35283189	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3774628	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs4072859	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858798	0.92[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs4858828	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs4858831	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs4955416	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs4974078	0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs4974079	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974080	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974084	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974085	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974091	0.88[EUR][1000 genomes]
rs55674449	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56318350	0.90[ASN][1000 genomes]
rs6414613	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6442130	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6446196	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446198	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6446205	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67060340	0.95[ASN][1000 genomes]
rs67332931	1.00[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6772452	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs6781790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6786665	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs6789285	0.89[EUR][1000 genomes]
rs6791234	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6791542	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs6795025	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6796790	0.93[YRI][hapmap]
rs6801211	0.92[YRI][hapmap]
rs71324924	1.00[ASN][1000 genomes]
rs7372149	0.87[EUR][1000 genomes]
rs7373072	0.88[YRI][hapmap]
rs7373778	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7373790	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7430198	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7430501	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431857	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7612459	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7615235	0.84[EUR][1000 genomes]
rs7615675	0.91[EUR][1000 genomes]
rs7616815	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs7621015	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626445	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs7627404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630742	0.82[EUR][1000 genomes]
rs7636057	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639332	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7643368	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7647093	0.89[EUR][1000 genomes]
rs7647813	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs7649458	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653459	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8926	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9284885	0.81[ASW][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9311430	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9311433	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9681717	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9682444	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9754878	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9755490	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9830636	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835307	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9840684	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846123	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9850134	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867373	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879971	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882549	1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:39)

SNP	Gene	Cis/trans	Tissue	Source
rs4974087	DALRD3	cis	cerebellum	SCAN
rs4974087	WDR6	cis	Artery Tibial	GTEx
rs4974087	AMT	cis	Muscle Skeletal	GTEx
rs4974087	P4HTM	cis	parietal	SCAN
rs4974087	ARIH2	cis	Thyroid	GTEx
rs4974087	AMT	cis	Whole Blood	GTEx
rs4974087	AMT	cis	Thyroid	GTEx
rs4974087	DALRD3	cis	parietal	SCAN
rs4974087	AMT	cis	cerebellum	SCAN
rs4974087	NICN1	cis	Thyroid	GTEx
rs4974087	WDR6	cis	Adipose Subcutaneous	GTEx
rs4974087	CCDC36	cis	Artery Tibial	GTEx
rs4974087	NCKIPSD	cis	Whole Blood	GTEx
rs4974087	NCKIPSD	cis	Nerve Tibial	GTEx
rs4974087	WDR6	cis	parietal	SCAN
rs4974087	WDR6	cis	uninvolved skin	skin_eQTL
rs4974087	WDR6	cis	cerebellum	SCAN
rs4974087	NCKIPSD	cis	Muscle Skeletal	GTEx
rs4974087	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs4974087	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs4974087	NCKIPSD	cis	cerebellum	SCAN
rs4974087	CCDC36	cis	Esophagus Muscularis	GTEx
rs4974087	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs4974087	WDR6	cis	Whole Blood	GTEx
rs4974087	WDR6	cis	Esophagus Mucosa	GTEx
rs4974087	TLR9	cis	parietal	SCAN
rs4974087	WDR6	cis	Heart Left Ventricle	GTEx
rs4974087	WDR6	cis	Muscle Skeletal	GTEx
rs4974087	CCDC71	cis	cerebellum	SCAN
rs4974087	NCKIPSD	cis	parietal	SCAN
rs4974087	PHF7	cis	parietal	SCAN
rs4974087	NICN1-AS1	cis	Thyroid	GTEx
rs4974087	WDR6	cis	Nerve Tibial	GTEx
rs4974087	P4HTM	cis	cerebellum	SCAN
rs4974087	WDR6	cis	Esophagus Muscularis	GTEx
rs4974087	WDR6	cis	lymphoblastoid	seeQTL
rs4974087	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs4974087	WDR6	cis	lung	GTEx
rs4974087	AMT	cis	parietal	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48889600-48935400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:48894400-48923000	Strong transcription	Fetal Intestine Small	intestine
3	chr3:48896400-48934400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:48896800-48934200	Weak transcription	Stomach Mucosa	stomach
5	chr3:48896800-48935000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:48897000-48921400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:48897000-48928600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:48897000-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:48897000-48934200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:48897000-48934200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:48897200-48923200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:48897200-48924400	Weak transcription	HSMMtube	muscle
13	chr3:48897200-48934200	Weak transcription	Colonic Mucosa	Colon
14	chr3:48897200-48935000	Weak transcription	NH-A	brain
15	chr3:48897200-48935200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:48897400-48921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:48897400-48934600	Weak transcription	Brain Anterior Caudate	brain
18	chr3:48900000-48922400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:48900200-48924200	Weak transcription	Placenta	Placenta
20	chr3:48900200-48932000	Weak transcription	Dnd41	blood
21	chr3:48900200-48932800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr3:48900200-48935000	Weak transcription	Esophagus	oesophagus
23	chr3:48901000-48923200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:48902200-48924800	Weak transcription	Fetal Brain Female	brain
25	chr3:48902400-48921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:48902600-48935000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:48904000-48931200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr3:48907000-48925400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr3:48911400-48926800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:48912200-48923400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:48912600-48922000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:48913000-48923400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:48913200-48920200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr3:48914600-48922200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:48914600-48933600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:48914800-48923000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:48915400-48920600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:48915400-48922600	Weak transcription	Small Intestine	intestine
39	chr3:48915400-48928800	Weak transcription	HSMM	muscle
40	chr3:48916000-48925000	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:48916400-48919800	Strong transcription	Pancreas	Pancrea
42	chr3:48916600-48919600	Strong transcription	Aorta	Aorta
43	chr3:48916600-48920400	Strong transcription	Primary T cells from cord blood	blood
44	chr3:48916600-48921800	Strong transcription	Fetal Intestine Large	intestine
45	chr3:48916600-48935000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:48916800-48919600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr3:48916800-48926600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:48917000-48922400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:48917000-48934800	Weak transcription	NHDF-Ad	bronchial
50	chr3:48917200-48920200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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