The 2.0 version of rSNPBase

Variant report

Variant rs67060340
Chromosome Location chr3:48915321-48915322
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:48889600-48935400 Weak transcription Brain Germinal Matrix brain
2 chr3:48889800-48916800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr3:48894400-48923000 Strong transcription Fetal Intestine Small intestine
4 chr3:48894600-48918800 Weak transcription HepG2 liver
5 chr3:48896400-48934400 Weak transcription Brain Hippocampus Middle brain
6 chr3:48896600-48918600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr3:48896800-48934200 Weak transcription Stomach Mucosa stomach
8 chr3:48896800-48935000 Weak transcription Brain Cingulate Gyrus brain
9 chr3:48897000-48916600 Weak transcription GM12878-XiMat blood
10 chr3:48897000-48918400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr3:48897000-48918800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr3:48897000-48921400 Weak transcription Primary B cells from cord blood blood
13 chr3:48897000-48928600 Weak transcription Colon Smooth Muscle Colon
14 chr3:48897000-48933600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr3:48897000-48934200 Weak transcription Primary hematopoietic stem cells blood
16 chr3:48897000-48934200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr3:48897200-48916600 Weak transcription Aorta Aorta
18 chr3:48897200-48918400 Weak transcription Gastric stomach
19 chr3:48897200-48918800 Weak transcription Ovary ovary
20 chr3:48897200-48918800 Weak transcription Psoas Muscle Psoas
21 chr3:48897200-48923200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr3:48897200-48924400 Weak transcription HSMMtube muscle
23 chr3:48897200-48934200 Weak transcription Colonic Mucosa Colon
24 chr3:48897200-48935000 Weak transcription NH-A brain
25 chr3:48897200-48935200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr3:48897400-48918800 Weak transcription Rectal Smooth Muscle rectum
27 chr3:48897400-48921400 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr3:48897400-48934600 Weak transcription Brain Anterior Caudate brain
29 chr3:48898600-48916800 Strong transcription Monocytes-CD14+_RO01746 blood
30 chr3:48900000-48916600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr3:48900000-48918200 Weak transcription Right Ventricle heart
32 chr3:48900000-48922400 Weak transcription Fetal Muscle Trunk muscle
33 chr3:48900200-48916600 Weak transcription Fetal Intestine Large intestine
34 chr3:48900200-48916800 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr3:48900200-48918400 Weak transcription Brain Substantia Nigra brain
36 chr3:48900200-48919000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr3:48900200-48919000 Weak transcription Fetal Muscle Leg muscle
38 chr3:48900200-48924200 Weak transcription Placenta Placenta
39 chr3:48900200-48932000 Weak transcription Dnd41 blood
40 chr3:48900200-48932800 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr3:48900200-48935000 Weak transcription Esophagus oesophagus
42 chr3:48900400-48916400 Weak transcription Pancreas Pancrea
43 chr3:48900400-48919200 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr3:48900800-48916600 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr3:48901000-48923200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr3:48902200-48924800 Weak transcription Fetal Brain Female brain
47 chr3:48902400-48921200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr3:48902600-48935000 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr3:48904000-48931200 Strong transcription Primary monocytes fromperipheralblood blood
50 chr3:48905000-48917400 Strong transcription Liver Liver

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Last update: Aug 31, 2015