Variant report

Variant	rs9835307
Chromosome Location	chr3:48857805-48857806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48850608..48852296-chr3:48856404..48858242,2	K562	blood:

Extended variants
information (count: 131 )
Associated
traits (count: 39 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10780033	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130176	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134591	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705737	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11705888	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11706983	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11708022	0.95[ASN][1000 genomes]
rs11708786	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11709246	0.95[ASN][1000 genomes]
rs11712982	0.92[ASN][1000 genomes]
rs11713694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11717978	0.95[ASN][1000 genomes]
rs11719291	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11719457	0.95[ASN][1000 genomes]
rs11920534	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12493578	0.92[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs12497850	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs12637037	0.84[EUR][1000 genomes]
rs13064883	0.90[EUR][1000 genomes]
rs13064911	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13072911	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13073997	1.00[ASN][1000 genomes]
rs13074318	1.00[CHB][hapmap]
rs13076394	0.91[EUR][1000 genomes]
rs13078308	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13090839	0.92[ASN][1000 genomes]
rs13092715	0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs13094900	0.97[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13434258	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs17080319	1.00[CHB][hapmap]
rs28642807	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34037363	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs34477108	0.95[ASN][1000 genomes]
rs34504524	0.87[ASN][1000 genomes]
rs34509487	0.95[ASN][1000 genomes]
rs35064573	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3774628	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4072859	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858798	0.92[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs4858828	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs4858831	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs4974078	0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs4974079	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974080	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4974082	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974084	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974085	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974087	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974091	0.84[EUR][1000 genomes]
rs55674449	0.88[ASN][1000 genomes]
rs56318350	0.95[ASN][1000 genomes]
rs6414613	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6442130	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6446196	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446198	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6446205	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66653195	0.80[EUR][1000 genomes]
rs67060340	1.00[ASN][1000 genomes]
rs67332931	0.95[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6772452	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs6781790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6786665	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs6789285	0.85[EUR][1000 genomes]
rs6791234	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6791542	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6795025	0.84[EUR][1000 genomes]
rs6796790	0.93[YRI][hapmap]
rs6801211	0.92[YRI][hapmap]
rs71324924	0.95[ASN][1000 genomes]
rs7372149	0.83[EUR][1000 genomes]
rs7373072	0.88[YRI][hapmap]
rs7373778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7373790	0.83[EUR][1000 genomes]
rs7430198	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7430501	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431710	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7431857	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612459	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7615235	0.81[EUR][1000 genomes]
rs7615675	0.87[EUR][1000 genomes]
rs7616815	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7621015	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs7623023	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626445	0.81[EUR][1000 genomes]
rs7627404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7628719	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7630742	0.86[EUR][1000 genomes]
rs7636057	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7639332	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643368	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7647093	0.86[EUR][1000 genomes]
rs7647813	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs7649458	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653459	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8926	0.84[EUR][1000 genomes]
rs9284885	0.81[ASW][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9311430	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311433	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311434	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9681717	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682444	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9754878	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9755490	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811027	1.00[CHB][hapmap]
rs9830636	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9834996	1.00[CHB][hapmap]
rs9840684	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846123	0.84[EUR][1000 genomes]
rs9850134	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867373	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879971	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882549	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	esv3434274	chr3:48855948-48859646	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:39)

SNP	Gene	Cis/trans	Tissue	Source
rs9835307	WDR6	cis	lung	GTEx
rs9835307	WDR6	cis	Adipose Subcutaneous	GTEx
rs9835307	CCDC36	cis	Artery Tibial	GTEx
rs9835307	CCDC36	cis	Esophagus Muscularis	GTEx
rs9835307	WDR6	cis	Esophagus Muscularis	GTEx
rs9835307	AMT	cis	parietal	SCAN
rs9835307	WDR6	cis	lymphoblastoid	seeQTL
rs9835307	AMT	cis	Muscle Skeletal	GTEx
rs9835307	NCKIPSD	cis	Nerve Tibial	GTEx
rs9835307	NICN1	cis	Thyroid	GTEx
rs9835307	CCDC71	cis	cerebellum	SCAN
rs9835307	AMT	cis	Thyroid	GTEx
rs9835307	NCKIPSD	cis	Muscle Skeletal	GTEx
rs9835307	NCKIPSD	cis	parietal	SCAN
rs9835307	WDR6	cis	Heart Left Ventricle	GTEx
rs9835307	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs9835307	AMT	cis	Whole Blood	GTEx
rs9835307	DALRD3	cis	cerebellum	SCAN
rs9835307	TLR9	cis	parietal	SCAN
rs9835307	NCKIPSD	cis	Whole Blood	GTEx
rs9835307	DALRD3	cis	parietal	SCAN
rs9835307	WDR6	cis	cerebellum	SCAN
rs9835307	P4HTM	cis	cerebellum	SCAN
rs9835307	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs9835307	AMT	cis	cerebellum	SCAN
rs9835307	WDR6	cis	Muscle Skeletal	GTEx
rs9835307	WDR6	cis	Artery Tibial	GTEx
rs9835307	WDR6	cis	Esophagus Mucosa	GTEx
rs9835307	P4HTM	cis	parietal	SCAN
rs9835307	WDR6	cis	parietal	SCAN
rs9835307	PHF7	cis	parietal	SCAN
rs9835307	WDR6	cis	Whole Blood	GTEx
rs9835307	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs9835307	NICN1-AS1	cis	Thyroid	GTEx
rs9835307	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs9835307	ARIH2	cis	Thyroid	GTEx
rs9835307	WDR6	cis	uninvolved skin	skin_eQTL
rs9835307	WDR6	cis	Nerve Tibial	GTEx
rs9835307	NCKIPSD	cis	cerebellum	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48810000-48882800	Weak transcription	Fetal Brain Female	brain
2	chr3:48820400-48868200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:48820600-48882800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:48821000-48858000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:48821000-48858200	Weak transcription	Gastric	stomach
6	chr3:48822400-48858200	Weak transcription	HSMMtube	muscle
7	chr3:48826400-48868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:48826800-48858200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:48826800-48869600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:48826800-48882800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:48827800-48858000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:48827800-48865600	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:48831400-48858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:48833800-48863600	Weak transcription	HSMM	muscle
15	chr3:48842200-48871200	Weak transcription	Fetal Stomach	stomach
16	chr3:48842800-48860600	Weak transcription	Fetal Intestine Small	intestine
17	chr3:48843200-48858200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:48847600-48858000	Weak transcription	Hela-S3	cervix
19	chr3:48847600-48858000	Weak transcription	HMEC	breast
20	chr3:48849000-48858000	Weak transcription	Brain Anterior Caudate	brain
21	chr3:48850400-48870600	Weak transcription	Primary B cells from cord blood	blood
22	chr3:48850600-48882600	Weak transcription	Primary T cells from cord blood	blood
23	chr3:48850800-48858200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:48850800-48863200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:48850800-48871600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:48850800-48882600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:48850800-48882600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:48851000-48882400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:48851400-48858200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:48851800-48864200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:48851800-48874400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr3:48852200-48858400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:48855600-48858600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:48855800-48858000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr3:48855800-48858000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:48855800-48863800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr3:48855800-48884000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:48856000-48858400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:48856200-48858000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:48856200-48858200	Weak transcription	Lung	lung
41	chr3:48856800-48858800	Enhancers	Right Atrium	heart
42	chr3:48856800-48861000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:48857000-48858000	Strong transcription	Brain Germinal Matrix	brain
44	chr3:48857000-48858000	Weak transcription	NHDF-Ad	bronchial
45	chr3:48857000-48859400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr3:48857200-48858600	Enhancers	Adipose Nuclei	Adipose
47	chr3:48857200-48858800	Enhancers	HUVEC	blood vessel
48	chr3:48857200-48859000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:48857200-48859200	Enhancers	Left Ventricle	heart
50	chr3:48857200-48859200	Enhancers	Skeletal Muscle Male	skeletal muscle

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