The 2.0 version of rSNPBase

Variant report

Variant rs13078308
Chromosome Location chr3:48878407-48878408
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:48810000-48882800 Weak transcription Fetal Brain Female brain
2 chr3:48820600-48882800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr3:48826800-48882800 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr3:48850600-48882600 Weak transcription Primary T cells from cord blood blood
5 chr3:48850800-48882600 Weak transcription Primary monocytes fromperipheralblood blood
6 chr3:48850800-48882600 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr3:48851000-48882400 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr3:48855800-48884000 Weak transcription Primary hematopoietic stem cells blood
9 chr3:48857400-48882600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr3:48857600-48882600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr3:48858000-48882600 Weak transcription Brain Germinal Matrix brain
12 chr3:48858600-48882400 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr3:48858600-48882800 Weak transcription Brain Cingulate Gyrus brain
14 chr3:48858800-48882600 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr3:48858800-48882600 Weak transcription Stomach Smooth Muscle stomach
16 chr3:48858800-48882800 Weak transcription Gastric stomach
17 chr3:48859200-48882800 Weak transcription Lung lung
18 chr3:48864200-48882800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:48864200-48883200 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr3:48864600-48882600 Weak transcription Brain Inferior Temporal Lobe brain
21 chr3:48864600-48882800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr3:48864800-48882400 Weak transcription HSMM muscle
23 chr3:48865200-48882400 Weak transcription Liver Liver
24 chr3:48865200-48882800 Weak transcription NHLF lung
25 chr3:48865800-48882600 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr3:48868200-48882600 Weak transcription Duodenum Mucosa Duodenum
27 chr3:48868400-48882800 Weak transcription Rectal Smooth Muscle rectum
28 chr3:48868600-48882600 Weak transcription Brain Angular Gyrus brain
29 chr3:48868600-48882600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr3:48868600-48882600 Weak transcription HMEC breast
31 chr3:48868600-48883000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr3:48868600-48883000 Weak transcription Fetal Muscle Trunk muscle
33 chr3:48869000-48882600 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr3:48869000-48882600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr3:48869000-48882800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr3:48870000-48882600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr3:48870200-48883000 Weak transcription Colonic Mucosa Colon
38 chr3:48870600-48882400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr3:48870600-48882400 Weak transcription Adipose Nuclei Adipose
40 chr3:48870600-48882400 Weak transcription HepG2 liver
41 chr3:48870600-48882600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr3:48870600-48882600 Weak transcription Brain Substantia Nigra brain
43 chr3:48870800-48882400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr3:48870800-48882600 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr3:48871800-48883000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr3:48872200-48882600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr3:48872200-48883000 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr3:48872600-48882800 Weak transcription Fetal Muscle Leg muscle
49 chr3:48873600-48882400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr3:48873600-48882400 Weak transcription K562 blood

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Last update: Aug 31, 2015