Variant report

Variant	rs11920534
Chromosome Location	chr3:48937761-48937762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:48937720-48937870	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SLC25A20	TF binding region

Extended variants
information (count: 124 )
Associated
traits (count: 37 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10780033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1134591	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11705737	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11705888	0.86[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11706983	1.00[CHD][hapmap]
rs11708022	0.87[ASN][1000 genomes]
rs11708786	1.00[CHD][hapmap]
rs11709246	0.92[ASN][1000 genomes]
rs11712982	0.95[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11717978	0.97[ASN][1000 genomes]
rs11719457	0.97[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs12491743	0.83[EUR][1000 genomes]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12497850	0.84[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12637037	0.90[EUR][1000 genomes]
rs13064784	0.81[EUR][1000 genomes]
rs13064883	0.95[EUR][1000 genomes]
rs13064911	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13072911	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13073997	0.92[ASN][1000 genomes]
rs13076394	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13078308	0.89[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13090839	0.95[ASN][1000 genomes]
rs13092715	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs13094900	0.90[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13434258	1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs28642807	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.97[ASN][1000 genomes]
rs34504524	0.90[ASN][1000 genomes]
rs34509487	0.97[ASN][1000 genomes]
rs34580506	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35064573	1.00[CHD][hapmap]
rs35283189	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3774628	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4072859	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap];0.90[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974084	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974091	0.89[EUR][1000 genomes]
rs55674449	0.90[ASN][1000 genomes]
rs56318350	0.97[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6442130	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446198	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67060340	0.92[ASN][1000 genomes]
rs67332931	0.92[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6772452	0.89[ASW][hapmap]
rs6781790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6786665	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs6789285	0.91[EUR][1000 genomes]
rs6791234	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6791542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6795025	0.90[EUR][1000 genomes]
rs71324924	0.92[ASN][1000 genomes]
rs7372149	0.88[EUR][1000 genomes]
rs7373778	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7373790	0.89[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7430501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7431710	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7431857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7432989	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7612459	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7615235	0.86[EUR][1000 genomes]
rs7615675	0.92[EUR][1000 genomes]
rs7616815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7621015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7623023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7626445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7628719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630742	0.80[EUR][1000 genomes]
rs7636057	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7639332	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7643368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7647093	0.90[EUR][1000 genomes]
rs7647813	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs7649458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7653459	0.81[EUR][1000 genomes]
rs8926	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9311430	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9311433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9311434	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9681717	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9754878	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9830636	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9840050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs9840684	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9846123	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9850134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9867373	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9879971	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9882549	1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv980012	chr3:48935037-48963512	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:37)

SNP	Gene	Cis/trans	Tissue	Source
rs11920534	NCKIPSD	cis	parietal	SCAN
rs11920534	NICN1	cis	Thyroid	GTEx
rs11920534	AMT	cis	parietal	SCAN
rs11920534	WDR6	cis	lung	GTEx
rs11920534	WDR6	cis	lymphoblastoid	seeQTL
rs11920534	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs11920534	DALRD3	cis	cerebellum	SCAN
rs11920534	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs11920534	NCKIPSD	cis	Nerve Tibial	GTEx
rs11920534	WDR6	cis	uninvolved skin	skin_eQTL
rs11920534	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs11920534	NCKIPSD	cis	Muscle Skeletal	GTEx
rs11920534	WDR6	cis	Muscle Skeletal	GTEx
rs11920534	NCKIPSD	cis	cerebellum	SCAN
rs11920534	P4HTM	cis	cerebellum	SCAN
rs11920534	WDR6	cis	Esophagus Mucosa	GTEx
rs11920534	PHF7	cis	parietal	SCAN
rs11920534	WDR6	cis	Artery Tibial	GTEx
rs11920534	NICN1-AS1	cis	Thyroid	GTEx
rs11920534	WDR6	cis	Esophagus Muscularis	GTEx
rs11920534	AMT	cis	Whole Blood	GTEx
rs11920534	ARIH2	cis	Thyroid	GTEx
rs11920534	P4HTM	cis	parietal	SCAN
rs11920534	WDR6	cis	Adipose Subcutaneous	GTEx
rs11920534	WDR6	cis	Heart Left Ventricle	GTEx
rs11920534	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs11920534	TLR9	cis	parietal	SCAN
rs11920534	WDR6	cis	Whole Blood	GTEx
rs11920534	WDR6	cis	cerebellum	SCAN
rs11920534	AMT	cis	Thyroid	GTEx
rs11920534	CCDC71	cis	cerebellum	SCAN
rs11920534	AMT	cis	cerebellum	SCAN
rs11920534	CCDC36	cis	Artery Tibial	GTEx
rs11920534	WDR6	cis	Nerve Tibial	GTEx
rs11920534	DALRD3	cis	parietal	SCAN
rs11920534	WDR6	cis	parietal	SCAN
rs11920534	AMT	cis	Artery Aorta	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48936600-48938000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:48936600-48954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:48936600-48954800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:48936800-48938000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:48936800-48940600	Weak transcription	Liver	Liver
6	chr3:48936800-48941200	Weak transcription	Placenta	Placenta
7	chr3:48936800-48948600	Weak transcription	Right Atrium	heart
8	chr3:48937000-48937800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:48937000-48937800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:48937000-48937800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:48937000-48937800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:48937000-48937800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:48937000-48937800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr3:48937000-48940600	Weak transcription	Primary B cells from cord blood	blood
15	chr3:48937000-48940600	Weak transcription	HepG2	liver
16	chr3:48937200-48937800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:48937200-48937800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:48937200-48937800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:48937200-48939800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:48937200-48941000	Weak transcription	GM12878-XiMat	blood
21	chr3:48937200-48941000	Weak transcription	Hela-S3	cervix
22	chr3:48937200-48941000	Weak transcription	K562	blood
23	chr3:48937400-48941600	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links