Variant report

Variant	rs9311434
Chromosome Location	chr3:48884147-48884148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr3:48884102-48885279	K562	blood:	n/a	n/a
2	MXI1	chr3:48884028-48886171	IMR90	lung:	n/a	n/a
3	GTF2F1	chr3:48884118-48885061	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr3:48883937-48885909	SK-N-SH	brain:	n/a	n/a
5	MYC	chr3:48884105-48884759	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:48723157..48725064-chr3:48882807..48884977,2	K562	blood:
2	chr3:48883728..48886453-chr3:48954781..48956546,2	MCF-7	breast:
3	chr3:48882526..48887589-chr3:48952932..48958567,11	K562	blood:
4	chr3:48882526..48886164-chr3:48952991..48958735,8	K562	blood:

Variant related genes	Relation type
PRKAR2A-AS1	TF binding region
ENSG00000177479	Chromatin interaction
ENSG00000213672	Chromatin interaction
ENSG00000221883	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 36 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10780033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134591	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11705737	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11705888	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11706983	1.00[CHD][hapmap]
rs11708022	0.85[ASN][1000 genomes]
rs11708786	1.00[CHD][hapmap]
rs11709246	0.95[ASN][1000 genomes]
rs11712982	0.83[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11717978	0.85[ASN][1000 genomes]
rs11719291	1.00[CHD][hapmap]
rs11719457	0.85[ASN][1000 genomes]
rs11920534	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12493578	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs12497850	0.84[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12637037	0.85[EUR][1000 genomes]
rs13064883	0.91[EUR][1000 genomes]
rs13064911	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13072911	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13073997	0.90[ASN][1000 genomes]
rs13076394	0.93[EUR][1000 genomes]
rs13078308	0.93[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13090839	0.83[ASN][1000 genomes]
rs13092715	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs13094900	0.88[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs13434258	1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs28642807	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.85[ASN][1000 genomes]
rs34509487	0.85[ASN][1000 genomes]
rs35064573	1.00[CHD][hapmap]
rs3774628	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4072859	0.89[EUR][1000 genomes]
rs4858798	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs4858828	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs4858831	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974084	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974091	0.85[EUR][1000 genomes]
rs56318350	0.85[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6442130	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6446198	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67060340	0.90[ASN][1000 genomes]
rs67332931	0.95[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6772452	0.89[ASW][hapmap]
rs6781790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6786665	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs6789285	0.86[EUR][1000 genomes]
rs6791234	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6791542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6795025	0.85[EUR][1000 genomes]
rs71324924	0.95[ASN][1000 genomes]
rs7372149	0.85[EUR][1000 genomes]
rs7373778	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7373790	0.84[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7430501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431710	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7431857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432989	0.81[EUR][1000 genomes]
rs7612459	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7615235	0.82[EUR][1000 genomes]
rs7615675	0.89[EUR][1000 genomes]
rs7616815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7621015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7623023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626445	0.82[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7628719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7630742	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7636057	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7639332	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7643368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7647093	0.87[EUR][1000 genomes]
rs7647813	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs7649458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653459	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8926	0.86[EUR][1000 genomes]
rs9311430	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9311433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9681717	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9754878	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9830636	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840684	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846123	0.85[EUR][1000 genomes]
rs9850134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9867373	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879971	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882549	1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:36)

SNP	Gene	Cis/trans	Tissue	Source
rs9311434	WDR6	cis	lymphoblastoid	seeQTL
rs9311434	WDR6	cis	Adipose Subcutaneous	GTEx
rs9311434	CCDC71	cis	cerebellum	SCAN
rs9311434	NICN1	cis	Thyroid	GTEx
rs9311434	AMT	cis	Whole Blood	GTEx
rs9311434	WDR6	cis	Artery Tibial	GTEx
rs9311434	WDR6	cis	cerebellum	SCAN
rs9311434	PHF7	cis	parietal	SCAN
rs9311434	P4HTM	cis	parietal	SCAN
rs9311434	DALRD3	cis	cerebellum	SCAN
rs9311434	WDR6	cis	Esophagus Mucosa	GTEx
rs9311434	NCKIPSD	cis	cerebellum	SCAN
rs9311434	NICN1-AS1	cis	Thyroid	GTEx
rs9311434	NCKIPSD	cis	Muscle Skeletal	GTEx
rs9311434	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs9311434	AMT	cis	Artery Aorta	GTEx
rs9311434	AMT	cis	cerebellum	SCAN
rs9311434	DALRD3	cis	parietal	SCAN
rs9311434	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs9311434	WDR6	cis	parietal	SCAN
rs9311434	WDR6	cis	Nerve Tibial	GTEx
rs9311434	WDR6	cis	Esophagus Muscularis	GTEx
rs9311434	AMT	cis	Thyroid	GTEx
rs9311434	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs9311434	WDR6	cis	Whole Blood	GTEx
rs9311434	NCKIPSD	cis	Nerve Tibial	GTEx
rs9311434	WDR6	cis	lung	GTEx
rs9311434	NCKIPSD	cis	parietal	SCAN
rs9311434	P4HTM	cis	cerebellum	SCAN
rs9311434	CCDC36	cis	Artery Tibial	GTEx
rs9311434	ARIH2	cis	Thyroid	GTEx
rs9311434	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs9311434	AMT	cis	parietal	SCAN
rs9311434	TLR9	cis	parietal	SCAN
rs9311434	WDR6	cis	Heart Left Ventricle	GTEx
rs9311434	WDR6	cis	Muscle Skeletal	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48882400-48884200	Enhancers	Liver	Liver
2	chr3:48882600-48884200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:48882600-48884200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:48882600-48884200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:48882600-48884200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:48882600-48884200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:48882600-48884200	Enhancers	Brain Germinal Matrix	brain
8	chr3:48882600-48884200	Enhancers	Brain Substantia Nigra	brain
9	chr3:48882600-48884200	Enhancers	Fetal Intestine Large	intestine
10	chr3:48882600-48884200	Enhancers	Stomach Mucosa	stomach
11	chr3:48882600-48884400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr3:48882600-48884400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:48882600-48884400	Enhancers	Small Intestine	intestine
14	chr3:48882600-48885600	Active TSS	GM12878-XiMat	blood
15	chr3:48882600-48886000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr3:48882800-48884200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:48882800-48884200	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:48882800-48884200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:48882800-48884200	Enhancers	Fetal Kidney	kidney
20	chr3:48882800-48884200	Enhancers	Placenta	Placenta
21	chr3:48882800-48884200	Enhancers	Lung	lung
22	chr3:48882800-48884200	Enhancers	Pancreas	Pancrea
23	chr3:48882800-48885600	Active TSS	NHLF	lung
24	chr3:48883000-48884200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:48883000-48884200	Enhancers	Fetal Brain Male	brain
26	chr3:48883000-48885800	Active TSS	Right Atrium	heart
27	chr3:48883400-48884200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:48883400-48884200	Enhancers	Fetal Thymus	thymus
29	chr3:48883400-48884400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:48883400-48884400	Weak transcription	Gastric	stomach
31	chr3:48883400-48885600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:48883400-48885600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:48883400-48886000	Active TSS	Right Ventricle	heart
34	chr3:48883600-48884200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:48883600-48884200	Enhancers	Brain Angular Gyrus	brain
36	chr3:48883600-48884200	Active TSS	K562	blood
37	chr3:48883600-48884400	Weak transcription	Esophagus	oesophagus
38	chr3:48883600-48885400	Active TSS	Hela-S3	cervix
39	chr3:48883600-48885600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:48883600-48885600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:48883600-48885800	Active TSS	NHDF-Ad	bronchial
42	chr3:48883800-48884200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr3:48883800-48884200	Active TSS	HMEC	breast
44	chr3:48883800-48884400	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr3:48883800-48884600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:48883800-48884600	Flanking Active TSS	Fetal Brain Female	brain
47	chr3:48883800-48884600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr3:48883800-48884800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr3:48883800-48885600	Active TSS	HSMM	muscle
50	chr3:48883800-48885800	Active TSS	Ovary	ovary

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