Variant report

Variant	rs7431710
Chromosome Location	chr3:48935583-48935584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:48900382..48902416-chr3:48934599..48936143,2	MCF-7	breast:
2	chr3:48933374..48937590-chr3:48954193..48958596,7	K562	blood:
3	chr3:48928069..48930846-chr3:48933340..48936058,2	K562	blood:
4	chr3:48919442..48921125-chr3:48933903..48935990,2	MCF-7	breast:
5	chr3:48934472..48936493-chr3:48955282..48957052,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221883	Chromatin interaction
ENSG00000177479	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 37 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10780033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134591	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11705737	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11705888	0.86[EUR][1000 genomes]
rs11706052	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11706983	1.00[CHD][hapmap]
rs11708022	0.85[ASN][1000 genomes]
rs11708786	1.00[CHD][hapmap]
rs11709246	0.95[ASN][1000 genomes]
rs11712982	0.92[ASN][1000 genomes]
rs11713694	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11717978	0.95[ASN][1000 genomes]
rs11719291	1.00[CHD][hapmap]
rs11719457	0.95[ASN][1000 genomes]
rs11920534	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11924597	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11928552	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs12491743	0.83[EUR][1000 genomes]
rs12493289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12497850	0.84[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12637037	0.89[EUR][1000 genomes]
rs13064784	0.80[EUR][1000 genomes]
rs13064883	0.95[EUR][1000 genomes]
rs13064911	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13072911	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13073997	0.90[ASN][1000 genomes]
rs13076394	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13078308	0.90[EUR][1000 genomes]
rs13086240	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13087930	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13090839	0.92[ASN][1000 genomes]
rs13092715	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs13094900	0.87[ASN][1000 genomes]
rs13315711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13316620	0.96[CEU][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13434258	1.00[CHD][hapmap]
rs1352420	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs28642807	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34037363	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34477108	0.95[ASN][1000 genomes]
rs34504524	0.87[ASN][1000 genomes]
rs34509487	0.95[ASN][1000 genomes]
rs34580506	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35064573	1.00[CHD][hapmap]
rs35283189	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3774628	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4072859	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974078	0.85[CHB][hapmap];0.87[CHD][hapmap];0.93[ASN][1000 genomes]
rs4974079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974084	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974087	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974091	0.89[EUR][1000 genomes]
rs55674449	0.88[ASN][1000 genomes]
rs56318350	0.95[ASN][1000 genomes]
rs6414613	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6442130	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs6446196	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446198	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6446205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446252	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446253	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67060340	0.90[ASN][1000 genomes]
rs67332931	0.95[ASN][1000 genomes]
rs6768433	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6772452	0.89[ASW][hapmap]
rs6781790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786665	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788650	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs6789285	0.90[EUR][1000 genomes]
rs6791234	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6791542	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6795025	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71324924	0.95[ASN][1000 genomes]
rs7372149	0.89[EUR][1000 genomes]
rs7373778	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7373790	0.88[EUR][1000 genomes]
rs7430198	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7430501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432989	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7612459	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7615235	0.86[EUR][1000 genomes]
rs7615675	0.93[EUR][1000 genomes]
rs7616815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs7621015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7623023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7627404	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7628719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636057	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639332	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647093	0.91[EUR][1000 genomes]
rs7647813	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs7649458	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653459	0.82[EUR][1000 genomes]
rs8926	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9311430	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311432	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9311433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311434	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637481	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9681717	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9682444	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9754878	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9755490	1.00[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9830636	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs9840684	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846123	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9850134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9867373	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876848	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879971	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882549	1.00[CHD][hapmap]
rs9884022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487342	chr3:48823957-48960475	Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3487343	chr3:48823963-48960381	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv980012	chr3:48935037-48963512	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:37)

SNP	Gene	Cis/trans	Tissue	Source
rs7431710	NCKIPSD	cis	Nerve Tibial	GTEx
rs7431710	WDR6	cis	Adipose Subcutaneous	GTEx
rs7431710	WDR6	cis	Muscle Skeletal	GTEx
rs7431710	WDR6	cis	uninvolved skin	skin_eQTL
rs7431710	WDR6	cis	cerebellum	SCAN
rs7431710	NICN1	cis	Thyroid	GTEx
rs7431710	WDR6	cis	parietal	SCAN
rs7431710	TLR9	cis	parietal	SCAN
rs7431710	WDR6	cis	lymphoblastoid	seeQTL
rs7431710	NCKIPSD	cis	parietal	SCAN
rs7431710	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs7431710	AMT	cis	Artery Aorta	GTEx
rs7431710	PH-4	Cis_1M	lymphoblastoid	RTeQTL
rs7431710	WDR6	cis	Whole Blood	GTEx
rs7431710	WDR6	cis	lung	GTEx
rs7431710	NCKIPSD	cis	cerebellum	SCAN
rs7431710	WDR6	cis	Heart Left Ventricle	GTEx
rs7431710	AMT	cis	Thyroid	GTEx
rs7431710	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs7431710	PHF7	cis	parietal	SCAN
rs7431710	AMT	cis	parietal	SCAN
rs7431710	AMT	cis	Whole Blood	GTEx
rs7431710	WDR6	cis	Esophagus Mucosa	GTEx
rs7431710	NCKIPSD	cis	Muscle Skeletal	GTEx
rs7431710	NCKIPSD	cis	Esophagus Muscularis	GTEx
rs7431710	P4HTM	cis	parietal	SCAN
rs7431710	CCDC36	cis	Artery Tibial	GTEx
rs7431710	ARIH2	cis	Thyroid	GTEx
rs7431710	AMT	cis	cerebellum	SCAN
rs7431710	DALRD3	cis	cerebellum	SCAN
rs7431710	WDR6	cis	Artery Tibial	GTEx
rs7431710	WDR6	cis	Esophagus Muscularis	GTEx
rs7431710	DALRD3	cis	parietal	SCAN
rs7431710	NICN1-AS1	cis	Thyroid	GTEx
rs7431710	P4HTM	cis	cerebellum	SCAN
rs7431710	WDR6	cis	Nerve Tibial	GTEx
rs7431710	CCDC71	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48929400-48935600	Weak transcription	Fetal Stomach	stomach
2	chr3:48934200-48935600	Enhancers	Fetal Heart	heart
3	chr3:48934200-48935800	Flanking Active TSS	Liver	Liver
4	chr3:48934400-48935600	Enhancers	Placenta	Placenta
5	chr3:48934400-48935800	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr3:48934400-48937000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:48934600-48935800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:48934800-48935600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:48934800-48935600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
10	chr3:48934800-48935600	Flanking Active TSS	GM12878-XiMat	blood
11	chr3:48934800-48935800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:48934800-48935800	Flanking Active TSS	Fetal Intestine Large	intestine
13	chr3:48934800-48935800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr3:48934800-48936000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:48934800-48936800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:48934800-48937000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr3:48935000-48935600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr3:48935000-48935600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr3:48935000-48935600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:48935000-48935600	Enhancers	Aorta	Aorta
21	chr3:48935000-48935600	Flanking Active TSS	Colonic Mucosa	Colon
22	chr3:48935000-48935600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr3:48935000-48935600	Enhancers	Fetal Lung	lung
24	chr3:48935000-48935600	Flanking Active TSS	Left Ventricle	heart
25	chr3:48935000-48935600	Flanking Active TSS	HepG2	liver
26	chr3:48935000-48935600	Enhancers	HUVEC	blood vessel
27	chr3:48935000-48935800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:48935000-48935800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr3:48935000-48935800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr3:48935000-48935800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr3:48935000-48935800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr3:48935000-48935800	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr3:48935000-48935800	Flanking Active TSS	Fetal Intestine Small	intestine
34	chr3:48935000-48935800	Flanking Active TSS	Pancreas	Pancrea
35	chr3:48935000-48935800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr3:48935000-48935800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr3:48935000-48935800	Flanking Active TSS	Stomach Mucosa	stomach
38	chr3:48935000-48935800	Flanking Active TSS	Thymus	Thymus
39	chr3:48935000-48935800	Flanking Active TSS	Dnd41	blood
40	chr3:48935000-48935800	Flanking Active TSS	Hela-S3	cervix
41	chr3:48935000-48935800	Flanking Active TSS	HSMMtube	muscle
42	chr3:48935000-48936000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr3:48935000-48936000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:48935000-48936000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr3:48935000-48936000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr3:48935000-48936000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:48935000-48936000	Flanking Active TSS	Osteobl	bone
48	chr3:48935000-48936600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:48935000-48936800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:48935000-48936800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links